Basic Information

Insect: Drosophila americana
Gene Symbol: -
Assembly: GCA_018152915.1
Location: JAECXQ010000357.1:18971140-18972847[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 4 7.2e+03 -3.5 0.1 9 18 248 257 248 257 0.89

2 4 9.6e-17 1.7e-13 49.7 0.0 2 45 370 413 369 413 0.95

3 4 0.043 77 2.8 0.0 28 37 443 452 442 458 0.89

4 4 1.1e-20 2e-17 62.3 0.0 2 42 479 519 478 521 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	4	7.2e+03	-3.5	0.1	9	18	248	257	248	257	0.89
2	4	9.6e-17	1.7e-13	49.7	0.0	2	45	370	413	369	413	0.95
3	4	0.043	77	2.8	0.0	28	37	443	452	442	458	0.89
4	4	1.1e-20	2e-17	62.3	0.0	2	42	479	519	478	521	0.96

Sequence Information

Coding Sequence: ATGAATCACCTAAAATGGATGGGGCACTCGTCCACAATAATGGATATACAGCGCGTTCTGCTGCATCAACAAAGCAACAATCAACAATGCGAGGTATTGCTCGTGGCCAAAGACGGCATCAGTGTGCGCGCCCATCTTTTCGTACTGAGTACGTGCAGCGATCTGATGCGCAACCTGCTTGTCGATTTACCCGCCGGCCAGGAGGCAACTGTCATCCTGCCAGACATTCGTGGTGAGCTGCTCGAGAGCATGTTGTCGTTTATTTACATGGGAGAGACCAGCTTACCCTCCGCCCTGCTTACCGAGTTTCTCGAGGCCATTAATCTATTGGGCATAAAGTCTGCCATTAGTTTCGAAACCAATCCCACAGCCATGACCAGCTCAAATGTCATAAGCGGCGCTATGGCGGTCGAGGCAGCCAAGTCAATAAGCGGCTTACACATTGCGAATACAGCTCTTATGGAGGAGGAGGAAGAGGAAGATGCTAGTGCGGTGGTCGGTAAACTGGAGGTAGGCAATGCAGTGCTCGCAAACCCCCAGCAGCAGCACGAACAAGAAGGCCGAACCTTGGAATTCCTTGATGTGTATGGTGAACAGCCCAAAATAACGTATTCGATTGAGCACATGGGTGGCACAAGCAGCGGCAACCAATATATATTAACAGAGAACACGGGAACATTTACTATAACACAATCAGCATCGTCTGTGGCTAAATTAGGTGTGGCAGGAAGTTCCGCGGTGGTGGAATCTGTGGCGACTGGTGAGATGGGCGATGATGATGCGGAGGCTGAAAATACGGACGAACAGGACGAATCGGAGTCACAGTTAATTGAGGAGGAGTATGTTGGATCAGGTGATCCGTTAATAGAGATGACCGCAGATGCGGATGTTGATATGCACGAAGATGGAATGCATGAAGGTGAACCTGGAGACGAGGAGGAAGATGATGAATTGCTGGATGTGAAACCCCGAAAAGTTCATCTAGATATGAATATGATAAAAGCAAAGGCACGCCAACGGCCAATGTCGGCAAAGGTTACAAAAAAGACAATGACAAAACAGTATCAACAACACGCCGCACTTAAAAAAGAAAGCAAGGATGACATCAATGATGCCCTCGATCTGGCAGCAGCTGCCGTACTCCACGAAGGGCTCAGCCTGCAAAAGGCTGCCGATCGCTACGACATATCGAAAACCGTGCTGTGGCGACGAGTGCGCTCTAATCCGGCCTATATGAGAATAAAGCGCGAAAAGCCATCGCTTTCGGAAGCATACGAGCGCTTAAAAAACGGCGACTCGTTGAAAAGCATAAGCCAGGATCTGCATATACCCATGTCGACGCTGCACCGACACAAGGTGCGGCTGGCGGAACAGGGACGCCTGCCCGATTTTGTTGCTTGCCGGCGGCGGGATAGCACACCAAAGGATGAGCTGCGCGACAAGCTTGCCAAAGCGGTGCATGCCTGCATAAATGGAGGCATGTCGCAAAATCATGCAGCAAATCTCTTCGAAATACCTAAAAGCACGCTCTGGCGGCACTTGCAGCGCCGCGTGACCGAGGCGGAGCGTAAAGTCAAGGAGGAACAGGAAGAGGATGAAGATGAGGATGTTCTTAATTAA
Protein Sequence: MNHLKWMGHSSTIMDIQRVLLHQQSNNQQCEVLLVAKDGISVRAHLFVLSTCSDLMRNLLVDLPAGQEATVILPDIRGELLESMLSFIYMGETSLPSALLTEFLEAINLLGIKSAISFETNPTAMTSSNVISGAMAVEAAKSISGLHIANTALMEEEEEEDASAVVGKLEVGNAVLANPQQQHEQEGRTLEFLDVYGEQPKITYSIEHMGGTSSGNQYILTENTGTFTITQSASSVAKLGVAGSSAVVESVATGEMGDDDAEAENTDEQDESESQLIEEEYVGSGDPLIEMTADADVDMHEDGMHEGEPGDEEEDDELLDVKPRKVHLDMNMIKAKARQRPMSAKVTKKTMTKQYQQHAALKKESKDDINDALDLAAAAVLHEGLSLQKAADRYDISKTVLWRRVRSNPAYMRIKREKPSLSEAYERLKNGDSLKSISQDLHIPMSTLHRHKVRLAEQGRLPDFVACRRRDSTPKDELRDKLAKAVHACINGGMSQNHAANLFEIPKSTLWRHLQRRVTEAERKVKEEQEEDEDEDVLN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00549654;
90% Identity: iTF_00512829;
80% Identity: iTF_00475321;