Damb010223.1
Basic Information
- Insect
- Drosophila ambigua
- Gene Symbol
- PRDM5
- Assembly
- GCA_018150905.1
- Location
- JAECWS010000002.1:1711825-1715468[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.0008 0.054 13.7 0.0 2 23 202 224 202 224 0.96 2 8 9.7 6.5e+02 0.9 1.2 2 21 799 820 799 822 0.87 3 8 1.4e-06 9.3e-05 22.4 2.8 1 23 892 914 892 914 0.98 4 8 0.00041 0.028 14.6 2.0 1 21 944 964 944 965 0.94 5 8 5.8e-05 0.0039 17.3 2.7 2 23 972 993 972 993 0.98 6 8 0.0083 0.56 10.5 1.1 1 23 999 1021 999 1021 0.98 7 8 0.008 0.54 10.6 1.0 1 23 1027 1050 1027 1050 0.97 8 8 0.0037 0.25 11.6 0.2 1 23 1060 1082 1060 1082 0.98
Sequence Information
- Coding Sequence
- ATGAACGATGCGGCTTTCTCGGGCTTCTACGGCGGCATTGGCAACCAGCTGCACCCGCCACTCCATCAGCAGCAGCAGCATCAGGAGCTGTCCCTGTCCACGCCCGTGCACGCCCTGGAGCCGGACACCAACTTCACGAGCTTCTTTGACGACGACATCGTGACCTGCGGCTCCACATCCTCCTCCGCCGTCTGGCTGCCCATCCAGCTGGGCAACGGCATCATACCCAATGGAGCAGCTATCAGTGCAGCGAACAAGGCGGCCGCAGAGGTTCCCTTTGTCCAGATCCACACCACGGACCTGCAGCAACAGGCGCAGCCCGAGAAGAGCTATCGCAATGCCTTCCGCCGCAGGACGGCGGAGATCAAGTCCGAGGAGCTGATCAAATCCGAGCTGGCCGAGGCCGCGGCCAAGGAGCGCCTGAATGCCACGCCCACACCGCCCACACGCAACTCCAGCTGCGCCAGCGTCGAGGGCAAGGCGATGGTGCAGGAGGTGCCGATACTCTTCAGGTGCCCCAACTGCCCGTTTCTCAGCCTCTGCCAGGTGAAGTCCAGCCAGCACGTGAACAACTGCTTCGGAACCAGCGCCGAGCAGCAGAGGCAGTGTCCAGGCTGCCCGAACATCTTCTACAGCAGCGACGCCCTCAATGTGCATCTCAGCATGGACCACCAACTGGATGACGATGAGATTGTGACCCTGCTGGGCGGCACAGCCACACCCCCCGCTGCGGCCGCCCCCGGCCACAAGCAGCCGCTGCCCAAGAGCCGGATCTTCATCAAGAGCGTGGACTGCCTGAGGGAGCCCCAGCAGGACTTCCTACCACTGCTGCAGCAGGCCACCGACTCTCCAGCCACATCCAGCAACATTCTGGATCTGCTCGATGAGGTGGTGCAGACGCCAGTGGTGGCGCCCTGCCACAAGCCCAGCAGCCAGAAGATATCCATCAAGAGCGTGGACGTGCTGAGGGAGCCTGCGCTGCTGACCTTTGACTTTCAGCTGCCCCATGGCTGCCAGGAGATGCCTCTGCTGGCGGAAAGCAATCTCGTGGATGTGCCACTGCCACTGCCAGTGATGGAGGTGGAGCCCAAGCCGCGTCAGCCCAAGATCTACATCAGAAACGTGGACATCCTCAAGGAGCCGATGCTGCTGCCCTCGTCCCTGCCCGGCATGGGCTTCAATGGCAGCGTGGCCACGACGATAGCGATGCAGAATGGAGTAGGAGGCGGAGGCGGTGGAGTTGCCAGCGATGTCTTCCAGGCGGATACGTTACTCACGCCAACGGGTCCGCTGCCAGGCTTCGAGCCCAGTCTGGCGCCCCTGGCCAACATGTGCTCCGAACCCTTTCCCTTCGACTCCGTGCTGAGTGTGGGCGGAGGTGGGGGTGCCTCCACGCTGGAGAACACTCGCTTCAGTGCCTTGGACTTGGACTTTGGCGTAGATTTTGACCATGGCATGGCGCCACTGCTCACCGAGGCCACCCCTCCGCCGCCGCCTCAGCCACAACCAGAGCCACAGCCTCAGGCGTCAGTGCAGTCCGGCCTCTCGGAACTGGAGCAGCCCGTCGAGCTGCAGCACTACCTGCCGCCGACTCCGAGCACCACGAAGCAGAAGATCTTCATCAAGAACGTGGACATCCTGAAGGCACCGCAGCGGGGCACTCTCCACCTGCGCACCGTCGACGAGCTCAACTTTATGACCCGTAACGAGGTGGAGCGCCTGATAGATCCGAACCTCGAGCCCATGCCCAAAATGGAGCCCCTGATGGACCAGCAGCACCAGCAGCAGCAGCAGCATGCGCACACGCAGCCACAGTCGCAGCCTCAGCCGCTGGATCCCCTGCAGCTGGAGCCGCACAACGCTCAGACGCTGGGCGAGTTCCAAGCTCCGCTGAGCGGCAGCTGGCCGAGCGAGGACAGCTACGACCTGGCCGGGGATCTGGAGGGCTGGCCCTGGATCGAGGAGGCCGTGCCAGAAGTCAATCCAAGTGAGACGGCCGCCGCATCCGAACCACAAGTGGAGGCCCTTCCCCAGTGCTCCTCCTCTGACGATTTCCCCCAGTTGTATCCCTCGCCGCCAGAGCCAGTACAGGGCGGAGGAGAGGCTGTGCCTCCCCTGGTGCCCGTCAGCGCCACGGATGACACTGCAGTCGCTGCCGCTGGCACCGCTGGCCCGATCAGTCTGCCCCTTCCTCCGCTGGTGCCGCTGGCGGCGGAGGCGGGCGAGAAGCCGGGACGCATCTATGTGGCCAACAATCTGCTGCCCGCGGCCGTGGACCCGCTGCCGGGTGGAACTTCGGTGCGTGGGCGTCCCTATGGCACCAAACTGACGGCGGGGAGCGGCGGAGGGAAGCGAAAAGCTGCGCCGAGCATCAGCCAGGCGGCCGAGGGGGGCAAGTGCCAGGTGGAGGGCTGCATGTTCCGCTTCAAGTCGCCGGCGACGCTGGAGTATCATGGCCGCTGCCACAACGACGCACTGGGATCGCCCCAGCAGATGGTCTGTCCGGAGTGTCGCTCCTCGGACTTCAGCAACTGGAACTGCCTGCACACGCACCTGTGGCGCACGCACCAGATCGACATGGAGCTCTACTGCTGCCAGCTGTGCAGCTTCAAGACGCCCATCTACTCGCGGCTGGTCAACACCCACGCCAAGATCCACTCCGAGGAGCGCAACTACAAGTGCGAGCAGTGCGGCAAGGGATTCAAGAACACCAAGCAGCTGAAGAACCACCGACGGCTGCACCGCACCCAGGGCCTGGGCATGGGCAAAGGACCGCTTCCAGATCAGGCCACAGCCGATGCTCCGCCCGCTACGCCCACGGCCATCCTGCATCGCTGCGGCGACTGTGGGGCGGCCTTCAAGCAGCGCAAGACCCTGCGCGAGCACCTCTGCAAGGAGCGTAACGAACAGCCGCAGTGCTCCCTATGCCAGCGGCTCTTCAGCTCCAAGAGCAGCCTCAAGCTGCACCAGCGCAGCCACCAGGCGAACAAGCGCTTCCAGTGCGACACCTGCGAGTACGAGGCGAGCGACCACAACGCCTTCCGCCGACATCTGGCCACGCATCGGGATCGCAAGCGATATGCGTGTCCCCATTGCGACTTTCGGGCGATACAGAGCACCGCCTTTCGGATACACCTGCAGAAGCGCCATCCCGAGCAGGAGCTGTCGTCCATCATCTACAAGTGCGATCTGTGCAGCTTCTCCAGCATCAATCAGGGCCTGCTGCTGGTTCATCAGGCCAAGCACGAGCACGAGGCGCCGCCAGCCAACAACCAACAGCCGCCGCATGCTGTGCCTGTTCCCGAGGCAGCACCAGCGACGGCTTCGACTCCATCACAGATCAAGGTGGAGACCAGCCTGCTGCTCGCCCATTCCAGTACAAATGTCGCCACGAAGCAGGCGGGCGATGCCTTGGCAGATGTCCCACAATTATCGTAA
- Protein Sequence
- MNDAAFSGFYGGIGNQLHPPLHQQQQHQELSLSTPVHALEPDTNFTSFFDDDIVTCGSTSSSAVWLPIQLGNGIIPNGAAISAANKAAAEVPFVQIHTTDLQQQAQPEKSYRNAFRRRTAEIKSEELIKSELAEAAAKERLNATPTPPTRNSSCASVEGKAMVQEVPILFRCPNCPFLSLCQVKSSQHVNNCFGTSAEQQRQCPGCPNIFYSSDALNVHLSMDHQLDDDEIVTLLGGTATPPAAAAPGHKQPLPKSRIFIKSVDCLREPQQDFLPLLQQATDSPATSSNILDLLDEVVQTPVVAPCHKPSSQKISIKSVDVLREPALLTFDFQLPHGCQEMPLLAESNLVDVPLPLPVMEVEPKPRQPKIYIRNVDILKEPMLLPSSLPGMGFNGSVATTIAMQNGVGGGGGGVASDVFQADTLLTPTGPLPGFEPSLAPLANMCSEPFPFDSVLSVGGGGGASTLENTRFSALDLDFGVDFDHGMAPLLTEATPPPPPQPQPEPQPQASVQSGLSELEQPVELQHYLPPTPSTTKQKIFIKNVDILKAPQRGTLHLRTVDELNFMTRNEVERLIDPNLEPMPKMEPLMDQQHQQQQQHAHTQPQSQPQPLDPLQLEPHNAQTLGEFQAPLSGSWPSEDSYDLAGDLEGWPWIEEAVPEVNPSETAAASEPQVEALPQCSSSDDFPQLYPSPPEPVQGGGEAVPPLVPVSATDDTAVAAAGTAGPISLPLPPLVPLAAEAGEKPGRIYVANNLLPAAVDPLPGGTSVRGRPYGTKLTAGSGGGKRKAAPSISQAAEGGKCQVEGCMFRFKSPATLEYHGRCHNDALGSPQQMVCPECRSSDFSNWNCLHTHLWRTHQIDMELYCCQLCSFKTPIYSRLVNTHAKIHSEERNYKCEQCGKGFKNTKQLKNHRRLHRTQGLGMGKGPLPDQATADAPPATPTAILHRCGDCGAAFKQRKTLREHLCKERNEQPQCSLCQRLFSSKSSLKLHQRSHQANKRFQCDTCEYEASDHNAFRRHLATHRDRKRYACPHCDFRAIQSTAFRIHLQKRHPEQELSSIIYKCDLCSFSSINQGLLLVHQAKHEHEAPPANNQQPPHAVPVPEAAPATASTPSQIKVETSLLLAHSSTNVATKQAGDALADVPQLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00515212;
- 90% Identity
- iTF_00564234; iTF_00611640; iTF_00603643;
- 80% Identity
- -