Damb004310.1
Basic Information
- Insect
- Drosophila ambigua
- Gene Symbol
- SMARCC2
- Assembly
- GCA_018150905.1
- Location
- JAECWS010000100.1:8125891-8130420[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 10 1e+04 -3.5 0.1 35 43 205 213 203 214 0.82 2 2 1.1e-14 1.2e-11 44.3 0.2 3 44 654 695 652 697 0.95
Sequence Information
- Coding Sequence
- ATGATGAACACACTGGGCCCCAAGAAGGACGGAAGTCCGAATATTGACTTCTTTCAGTCGTCGGAGACGCTGCAAGGCTTCGAATCAATTAGGCAATGGCTGCAAAAGAATTGTAAAAAGTACCTAGCGCACAGCTCAGAGCCCATTACCAAGGAGTCCCTGGCCCAATTGCTGATACAATTTCTGCAATATGTGGAGGCGAAACTTGGCAAAAACTCGGCCGAGCCACCGGCGACCAGAATTCCGATGCGTTGCTTTCTGGACTTTAAGAACGGCGGAGGTCTGTGCATCATCTTCTCTACGATGTTCCGATTTCGCGCGGAGCAGCGGGGAAAAAAGTTTGACTTTTCCATTGGGAAGAATCCCACGAGGAAGGATCCCAACATTCAGCTTCTGATCGAGATCGAGCAGGCTCTGGTGGAGGCGGATCTATACCGCATACCCTACATCTATATAAGGCCGGAGATCGAGAAGGGCTTCGAGGGACGGCTGCGCGAGATTCTCGACAATCGGCGGGTGGAAATCGTCACCGACGAGGAGGATGCCACGCACATTGTCTATCCCATTGTGGATCCGCATCCGGACGAGTATGCGCGTCCCATTTTCAAGCGTGGCAGCCATGTGATGCTACATTGGTACTACTTTCCCGAGTCCTATGATTCGTGGACGGTAAACAGCTTCGATTTGCCGGAGAATATTCCCGAGAATCCGGAATCGCCGGCCGAGAGGTGGCGCGTCTCGGCCTCCTGGATACTCGACTTGGAGCAGTACAACGAATGGATGGCCGAGGAGGACTATGAGGTGGATGAGCAGGGCAAAAAAAAGACGCACAAGCAGCGCATGTCGATTGACGACATCATGTCGTTTGGCGACGAAAAAAAGAAGCCCAGCACCAGCACTGGCAAGCAGAAGCGCCGCCGTTCGCCCTCGCCCACAACATCCACATCGAAGCCCGGCAAGCGCAAGCGTTCTCCGGCCGTCATCCACAAGAAAACCCGAAACGATGAGGAAGATGAAGATCTGACACGGGATCTGGACGATCCGCCGGCCGAGCCGAATGTTCAGGAGGTGCACAAGGCCAGTACGGCCCTGCAATCGACCTCCAGTCCGGCACCAGGTAGCAAGTCACGCGGCGACAACGATATGATGCCCATCAAGGGTGGAACGATGACGGATCTGGACGATGAGATGACTGGGGGCAGCGCTGCCCAGGCACTGTCCACTGGCGATGGGGACAACTCGCAGACGGGCAAGACGAGCGACAATAGCAACACGCAGGAGTTCTCATCATCGGCCAAGGAGGATATGGAGGATAATGTGACCGAGCAGACGCATCACATCATTGTGCCCTCGTATTCGGCATGGTTTGACTACAATTCTATCCATGTGATCGAGAAGCGCGCCATGCCGGAGTTCTTCAACAGCAAAAACAAATCCAAGACCCCAGAGATTTACATGGCCTATAGAAACTTTATGATAGATACCTACAGACTCAATCCCACGGAGTACTTGACCAGCACCGCCTGCAGACGCAATCTGGCGGGAGATGTGTGCGCCATTATGCGTGTGCACGCCTTCCTGGAGCAGTGGGGATTGATCAACTACCAGATCGATGCCGATCTGCGTCCCACGCCCATGGGACCGCCGCCTACCTCGCATTTCCACATACTGTCGGATACGCCCTCGGGCCTGCAGGCCATTAATCCGCAGAAAACTCAACAGCCATCGGCGGCCAAGACGCTGCTGGATCTCGACAAGAAGCCGCTGGGCAAGGATGGTAGCTTGGAGAGCCTGGGCGGCGATAAGAGCGGCACTCTTGGCGCAATCAAAACGGAGGCTTTGGAGAATGGAGCCGCCAGTGGCCTGAGCTCTGGCGTGAGCCAATTCGGCTTGAAGTTGGATCAGTATGCCAAGAAGCCGTCTGCCATGAGGAACCGCACGGCGGCCAGCATGTCCAGGGAGTGGACCGACCAAGAGACGCTGCTTCTGCTGGAGGGCCTGGAGATGCACAAGGATGACTGGAATAAGGTGTGCGAGCATGTGGGCTCTCGCACCCAGGACGAGTGCATTTTGCATTTCCTGCGGCTGCCCATCGAGGATCCCTATCTGGAGGATGATGGCGGCTTCCTGGGACCTCTGGGTTGTCAGCCCATACCGTTCAGCAAGAGCGGCAATCCCATTATGTCCACAGTGGCATTTCTGGCCTCTGTGGTGGATCCCCGTGTGGCCGCCGCAGCCGCCAAGGCAGCCATGGAGGAGTTTGCAGCCATTAAGGACGAGGTGCCAGCCACCATTATGGACATCCATATAAAGAGCGTGAAGAAGGCCTCCGCTGGCGGCAAATTCAATCCGAACTTTGGTTTATCCAACAGCGGCATTGCTGGCACTGGCAACGACAAGGAGGATGAGGAGAGCAAGGATGGCAGCAGCGGCGGCTCGGCCACAGCGGCCGGTGGCGCAGCGGCAGGAGGAGGAGCAGCAAGTGATGAGGAAATGAAGGATCTAACCAAGAAAGACGACGATGCCAAGTCCAAAGACAAAACGAAATCGGATACCAAGACGAACACAAACACAGACTCTAGTTCCACATCATCATCATCAACGACAGCCACAAGCAACACGAACACAACTACAGATAATAAGAAACTGAAAGATTCGTCGGATAAAGCCAGCAAAACAGACAAATCAAACAAATCCTCACCCACAGACCCAGCAGCAGCCGGAGCAGCAGTTGTGCCCAGTGGCAGTGGAGTGGGCGGAGCATCAGTGGATGTGGACATCAAAACGGAGGAGAACAGTGGCGATGGGGAGACCAAGGATGGCAGCGATGGCTCCAAAGATGGCTCGAGTGGGCAGGGCAGCAACAAGGAGGGAGCCTTCAGTGAGAACAACATGCAGACGGCAGCAGCAGCCGCACTGGCCTCGGCGGCCGTCAAGGCCAAACATTTGGCTGCACTCGAGGAGCGCAAGATCAAGTCTTTGGTGGCCCTGCTGGTCGAGACGCAAATGAAGAAGCTAGAGATTAAGCTAAGGCACTTTGAGGAGCTGGAGGCCACCATGGAGAGGGAGCGCGAGGGCCTGGAGTACCAGAGACAGCAGCTGATTACAGAGCGCCAGCAATTCCATTTGGAGCAGCTGAAGGCCGCCGAGTTCCGTGCGCGCCAGCAGGCGCATCATCGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAGGCGCAAGTGCAGACCCAGCCGCTGGCAGCTCCATCGGCACAGCATCAGCCACTGCCGCCGCACATAGCAGCGGTGGGCGTGGGTCCGCCACCAAATGGGGCGGCGCCTTTCGCAGCGCCGCCCATGGCGACGGCAGCAGCTGGTGGTGGACCACCTCCAACAGGAGGAGGCATACCAGTGGTTTTGGCGACTGCCAGCGAACAAGCAGGGGCAGCAGCAGCAGCTGCCGCAGCCGCAGCCTCAGCGGCGCAACCTCAGGCACCCACAGCGATGGATACCACACCCCCGACAATCACTGCACCTGTGGCCGAGGTCCCTAGTGCACCGGCTGTAGGATCGGTTGTGCTGCCGCCTGCCGTCTCAAGCATTCCTCCGGCCAGCGCTGTGGCTCCTGTGGCTGTACCAGCCGTTGCTCCACCATCTTAA
- Protein Sequence
- MMNTLGPKKDGSPNIDFFQSSETLQGFESIRQWLQKNCKKYLAHSSEPITKESLAQLLIQFLQYVEAKLGKNSAEPPATRIPMRCFLDFKNGGGLCIIFSTMFRFRAEQRGKKFDFSIGKNPTRKDPNIQLLIEIEQALVEADLYRIPYIYIRPEIEKGFEGRLREILDNRRVEIVTDEEDATHIVYPIVDPHPDEYARPIFKRGSHVMLHWYYFPESYDSWTVNSFDLPENIPENPESPAERWRVSASWILDLEQYNEWMAEEDYEVDEQGKKKTHKQRMSIDDIMSFGDEKKKPSTSTGKQKRRRSPSPTTSTSKPGKRKRSPAVIHKKTRNDEEDEDLTRDLDDPPAEPNVQEVHKASTALQSTSSPAPGSKSRGDNDMMPIKGGTMTDLDDEMTGGSAAQALSTGDGDNSQTGKTSDNSNTQEFSSSAKEDMEDNVTEQTHHIIVPSYSAWFDYNSIHVIEKRAMPEFFNSKNKSKTPEIYMAYRNFMIDTYRLNPTEYLTSTACRRNLAGDVCAIMRVHAFLEQWGLINYQIDADLRPTPMGPPPTSHFHILSDTPSGLQAINPQKTQQPSAAKTLLDLDKKPLGKDGSLESLGGDKSGTLGAIKTEALENGAASGLSSGVSQFGLKLDQYAKKPSAMRNRTAASMSREWTDQETLLLLEGLEMHKDDWNKVCEHVGSRTQDECILHFLRLPIEDPYLEDDGGFLGPLGCQPIPFSKSGNPIMSTVAFLASVVDPRVAAAAAKAAMEEFAAIKDEVPATIMDIHIKSVKKASAGGKFNPNFGLSNSGIAGTGNDKEDEESKDGSSGGSATAAGGAAAGGGAASDEEMKDLTKKDDDAKSKDKTKSDTKTNTNTDSSSTSSSSTTATSNTNTTTDNKKLKDSSDKASKTDKSNKSSPTDPAAAGAAVVPSGSGVGGASVDVDIKTEENSGDGETKDGSDGSKDGSSGQGSNKEGAFSENNMQTAAAAALASAAVKAKHLAALEERKIKSLVALLVETQMKKLEIKLRHFEELEATMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHHRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQAQVQTQPLAAPSAQHQPLPPHIAAVGVGPPPNGAAPFAAPPMATAAAGGGPPPTGGGIPVVLATASEQAGAAAAAAAAAASAAQPQAPTAMDTTPPTITAPVAEVPSAPAVGSVVLPPAVSSIPPASAVAPVAVPAVAPPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611283;
- 90% Identity
- iTF_00487229;
- 80% Identity
- -