Damb014184.1
Basic Information
- Insect
- Drosophila ambigua
- Gene Symbol
- -
- Assembly
- GCA_018150905.1
- Location
- JAECWS010000095.1:3776687-3781071[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.9e-12 1.5e-08 34.0 0.0 1 40 556 596 556 599 0.90 2 4 4.4e-14 8.3e-11 41.2 0.1 2 39 611 648 610 651 0.94 3 4 1e-17 1.9e-14 52.8 0.0 1 45 665 710 665 710 0.98 4 4 1e-19 2e-16 59.2 0.0 1 43 717 760 717 761 0.97
Sequence Information
- Coding Sequence
- ATGGCGAAAGTGTTGTTGGAACTGGGCTGTGCTTCGGATGGACACCACTGCGGACTGTGGACACTGGGCCTGTTGCGCACGGCCGAACAACTGAAGATCAAAGGCCTCTGCGAGACAGCGGAAAACGCGGATGATTTGAACGACGCGGCCACAGCGACAATAACCGTGTCGGAGAACATCCAGCAGGCGGTCGTGGGGAGCATTGTGAATCCCAGCATACACGGAGTGGCCAGTGGCAGCGGCGTACCTTTGGGCGGACAGCTGCTTAGCACGACAGCGAGTGGGAGCAGCGGCAGTGGAGCAGGCAGTCTCCAGTCGCATTCCGGGCTCCAGCCGACGACGCGCAAGTCGCGACTCAAGCGGTCCAAGTCTCCGGATCTGCAGTTGAGCGGAGGCAACGGTAACGGCAGCGGCAGCAGCGTATCCCAGCAGCCACAGCCGGCCCATCACCACTCGCAGACGCTGCTCATTCAGGGCCAGAACCAGACCTCCATTGTGAGCCTACAGCAGACGGCCGAGGGCAATTATATACCCGTGCCGGGCACCGGTGACGAGTCGGACGTGGATCACGATCAGGATCACGATCACGACCACTCCCACGATCACTCTCACAATCTATCACACTCCCACGACCACGACCACGATCACGAGCACGAGCACGAGAGCAAGCCGAGCAAGATCTGCAAGACAGAGCAATCGCTCGCCTCGCCGTCGTCAAACTCGTCCAGCCACTCGAACAATGCAACGGGCGTGAGCGGCGGAGTGACCTCAGCGGGCCAAGCCATCGTCACACAAATTGTAGTAGCGCGCGACGGAAAAGATACAAAAAATATGACTAGTTTAGGCATGGGCATGAACGGAGGCCTGCTAGGCGTGCCCATGGGATTCCTGGACTTCACACCCGAGCCACCAGCACCATCTGCCACACCAGTCACCGTTACGGAGCACGTCGACCTCTCGTGCAACCCCAGTACGGACACACGCGATCTATCAAATCCCACCGAACCGCTCGACATTGACAATCACCTGGCGCAGCAGATACATCGACTCGATCAATCTCCCATGCATTCGATAGCCCATCATCACACCGGGGACGAGAGCAACTCGAACCTGGTGCAGCACATCAAGAGCGAGGTGATCGATGCCAAGCACCTGGCGGCTGCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTGGGCATGTATCGCACGCGGAGATCAGTGGGGCAACTGTCATGGAGATTGATCCGAGCCAAATCAAGCACGAGCCTGGGATGATTATAACGCCGGAGATTGTCAATATGATGTCCTCAGGGCATATGGATATGTACAATTCGGACACGAGCGAGGATTCGATGATGATCGCCAATGGCTCGCCGCACGATCAGAAGGAGCCGCACTACACGAACTTGGATCAGCAGCATGGAGGCGGGCTGGGTCAGTTTAATGGTCCCAAAGCTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAACCAAAACATGAGCCTGACGAAAGCATCTGCCATTTATGGCATCCCATCGACCACCCTCTGGCAGCGTGCTCATCGTCTGGGCATCGAAACGCCCAAGAAGGAGGGCGGCACCAAGTCGTGGAACGAGGATGCCCTGCAGAACGCCTTGGAGGCGTTGCGCTCGGGCCAGATATCCGCCAATAAGGCATCGAAAGCCTTTGGCATACCCTCATCGACGCTCTACAAGATAGCGCGTCGTGAGGGCATCCGCCTGGCGGCGCCGTTCAATGCCGCACCAACCACATGGACGCCCGAGGACTTGGAGCGTGCATTGGAGGCGATCCGGGCGGGTAATACCTCTGTACAGAAAGCCAGCGCTGAGTTTGGCATACCCACAGGAACACTTTACGGACGCTGCAAGCGGGAGGGCATTGAGCTGTCGCGTTCGAATCCCACTCCATGGTCCGAGGATGCCATGAACGAGGCCCTCAACTCAGTGCGGGTTGGCCAAATGTCCATCAACCAGGCGGCCATCCACTACAACCTGCCCTACAGCTCGCTCTACGGCCGCTTCAAGCGGGGCAAGTACGATGTGGTGGCCAACACTAGCGGCGTGTCGCTGATGAACACCTCGGGCAACACCACGGGCAGCATTGAGATTATCGAGCACAGTCAGGAGAACTCGTTGCATATGTTGCAGCAACAGTTCCCGTACAGTCCATCGCCGCATCCGCCAACGCCCCAGCATCATAGCACACCGCAGCATCACAGCTCGTCCCAGGGGCCGCCAACGCCGCAGCATATGCAACAGCATGTGGTGCACATGCAGCAACAGCAATCGCCCCACCAGGGCCACCATCCGCAGCACATGCAGCAGGACGTGGTGACGTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATCTATCAGCACCATGGCACGCCCGAGCGTAGTTGA
- Protein Sequence
- MAKVLLELGCASDGHHCGLWTLGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGSIVNPSIHGVASGSGVPLGGQLLSTTASGSSGSGAGSLQSHSGLQPTTRKSRLKRSKSPDLQLSGGNGNGSGSSVSQQPQPAHHHSQTLLIQGQNQTSIVSLQQTAEGNYIPVPGTGDESDVDHDQDHDHDHSHDHSHNLSHSHDHDHDHEHEHESKPSKICKTEQSLASPSSNSSSHSNNATGVSGGVTSAGQAIVTQIVVARDGKDTKNMTSLGMGMNGGLLGVPMGFLDFTPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQQIHRLDQSPMHSIAHHHTGDESNSNLVQHIKSEVIDAKHLAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGHVSHAEISGATVMEIDPSQIKHEPGMIITPEIVNMMSSGHMDMYNSDTSEDSMMIANGSPHDQKEPHYTNLDQQHGGGLGQFNGPKAWTQDDMNSALDALKNQNMSLTKASAIYGIPSTTLWQRAHRLGIETPKKEGGTKSWNEDALQNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGNTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVVANTSGVSLMNTSGNTTGSIEIIEHSQENSLHMLQQQFPYSPSPHPPTPQHHSTPQHHSSSQGPPTPQHMQQHVVHMQQQQSPHQGHHPQHMQQDVVTSXXXXXXXXXXXXXXXXXXXXIYQHHGTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611272; iTF_00484364;
- 90% Identity
- -
- 80% Identity
- -