Dalg012001.1
Basic Information
- Insect
- Drosophila algonquin
- Gene Symbol
- -
- Assembly
- GCA_035041765.1
- Location
- JAWNKY010002198.1:41409-45369[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8e-05 0.0066 17.0 0.1 1 23 175 198 175 198 0.96 2 13 0.0017 0.14 12.8 3.1 2 23 247 269 243 269 0.90 3 13 0.0073 0.61 10.8 0.8 1 23 358 381 358 381 0.93 4 13 0.31 26 5.7 5.5 2 23 430 452 429 453 0.95 5 13 0.0014 0.11 13.1 0.6 1 23 521 544 521 544 0.88 6 13 0.00067 0.055 14.1 3.3 2 23 595 617 595 617 0.96 7 13 0.002 0.17 12.6 0.0 1 23 702 725 702 725 0.95 8 13 0.00067 0.056 14.1 0.2 1 23 789 812 789 812 0.93 9 13 0.0011 0.093 13.4 2.2 2 23 862 884 861 884 0.97 10 13 0.0032 0.26 12.0 3.8 1 23 977 999 977 1000 0.94 11 13 0.051 4.2 8.2 1.5 1 21 1052 1072 1052 1073 0.95 12 13 3.4 2.8e+02 2.4 0.1 2 21 1114 1135 1113 1138 0.66 13 13 0.38 31 5.5 1.9 1 23 1155 1179 1155 1179 0.70
Sequence Information
- Coding Sequence
- ATGGAAGGAATGGACCTGTGGACGTCCATGTTCTCGGCAGACTTCGAGGAGGGCGAGGAGGAGATCGAGCAATACGCGAATGAAAATGGCCTGGACAGCAATCCTGCCGGCGACAGTGACGACATTCTGCCCGAGGGCGAtggcgacgacgaggacgaagaaaacgaggaggaggaggacgatgaTGCTAATAATGATGCGgaggacgatgaggaggaggggaCTGGCCGCGGCagtagaaaaataaaagaaccCGATCTGGACGATGATGCCATATTTGATTTTGATCTGGAGCCGATTGTAAGCATTGgggagccacagccagctcCTTTGCTGGCGCCTCCGGGTCCACTTGGCGCACCTGTGCGTCCCATACATCGCCACTCACTGCCAAGGGCCAGCCAGGGTCAGACCAGACCCAAGGAGGTGCGTCTATCGGGCGTGCTTACGCGACCCACCACCTCGCAAATCAATGCAACCGATGCGAACGGGATTCCCATCAACTATGAGCTGGGCGTCATCTACATCTGTCCCGCGTGCGGAGCGGAATTCCGGCAGCAGGATCTCTGGAAACGCCACATGAACCAAATGCACCAGTTCAACACTCGCCGCGGCCTCAACTTTATGGCCCTGGACAAGCTTTATCATCGGTGCCTGGAGTGCAACAAGCGCATTGCCATGCACAGCCGGGAGAACCTTCTGAAGCACAAGTTCACCCATTTGCCGTTTAGGTGCACCAAGTGCTACATCTGCAAACGGGAGTACAAATACAGACAAGACCTGATGGTCCACCTGAGAATGGTGCATTGCGACGAGGTGGTGGCCATGATGCGGGAGGGCTTCAACTTGGCGGGACGAAAGACGCGGGTACGGGAGCCCCGCACAGAGCAAATGCTGCGGAAGGACCCCTTCCCAGAGGAGGTTGATGAGCGAAACGATCTTCTCGAGCCGGAGACTGAGACTATGACGCCCATGCTCGAAGAGGAAGCTCCGCAGAGGCGTAGGAAGAAGCGCTATCAAGGTGGTCCCTCCGGCGATGGGGGTGCGGATCTTTGCGAGGATTACATCCACTACATGTGCCCCGATTGCGGCACTGAGTGCGACACCCACGCCCAGTGGAGTCAGCACATTGAGTTTGTCCACGACTACGTCAGTCGCAGGGGTCTCAACTTTATCAGCGTGGACATGCAGATGCAGTGCCTCGAATGCAAGAAGATTGTCATCCCCAACACAATTAAGACGCTGCGGGCGCACAAGTTCACGCATCTGTCGCAGCCCGAGTGGCTCCGCTGCAAGCTGTGCTACAAGGGCTATACGGAGCACCATGAGCTGGTTACTCATCTGCTGAAGCAACACCACCTAGAATCGCTGATGCCAGAGGAGTCGGAGCCGGATTCATCACCCGTCAAAAGGACAGACGGCGGTGGAGGTGGCGGAGGGGACGACTGGGAGGACATTGGAAATGGGAACGTCTTCGATGACGTGTCACCGCACTTTGAGGATGTGCCTCGGCGGGGAGGCCGTATCGGAAGCGACGATATGTATGAGCCACACATCGACTACCTGTGTCCACAGTGCGGCAAGGAATTCATCGAGAAGAAGCACTGGCGCACCCATGTGGTGCAGGTCCACGGCATGAACGATGTGACGAAGCTCAACTTTGCGATAATCAATGAACGCCAGCTGAAGTGCACGGAGTGCGCCAAGATCATAACGAACGCCTACGGCATCCAGAACGCTCAGCAGCACCGGATCACGCACTTGCCATTCAAGGCGTACGCCAGGTGCCGCAAATGCCACAAGTCTTACACGGACCGCAAGGGTCTGGTCAAGCATCTGGCCACCTACCATCGTGTGGGCTACGTGCCGCGCAAAAGCCTCAAAAGAGCCGGACGAGCAGGCCCGCTGTTTGCATCGCCCAAGCAGCAACGCAAACAGATTGTGACCTTGGGAAAAGAGACCTACGAGATCATCTTCCTGGACGAAGAGCAGACGCACTCAAGCGTCGACGAGGAGAACGACTTTGGggagcagatgcagatgccggATGAGGAGGATTTGCCCACTGTCAGTGCTGGCGTGCCGCCGCCGAACCCGAATCGCTACAAGTGCGTGGAATGCCCGACGCTGTTCCCAACCCAAGTAGCTCTCAAGTTGCACATAAGCGAGGCACATGCGTTCCGGGATCCCCCTCAGTACGGGGCATCCATGAAATTGGACAAATCCCAAGGCAAAGAGGAGGCGCCCAAGAAGAGGAGACTAGGAGCGGGACCAGCGCCAGCATCGATACCATCATcactatcatcatcatcattagcgCCCACAAGCAGCCCATCGTTGGGCACCGTAGAGCAGAACTACATATTTCTGTGCCCCTCGTGCGGCGAGGAGTACAAGACGCAGTTCGAGTGGCGCCGCCACATCAACGAGGCCCACAACTTCGACAAGCGACAGTATCTTAACATGCGGCAGCTGGACAAGTACCGATACCAGTGCACCCAGTGCAACGACATTGTGTGCAACTCCAAGTTGAAGGGCCTGCAGGACCACCACTTTCGCCATCTACCCTTCCGCCTGTACCTCAAGTGCCTCGTGTGCGGTACCTGCTACAACCACAAGCCCAACATTGCCGCCCATCTGAGAACGCGACACAATATCTACGAGCGGGAAACGCCCTGGCGGGAACTACACACCAAACCACAGTACTCTTATGTTCAGTCCAAGGAAAAGGACAGGGATACGGCCGTCAAGAGCAGGCCGCAATCACCCTCGCATGCAGTGGCAGTTGTCCCCTCCTCCTCAGGCTCCAGTAGCAGCAGTCGCCCGCTCTGGCCGCAGTCAGAGAAGCGTCCCACACGGCCGGCCGGACTCAACACCCTGGAGGACAGCATCTCATACCACAATGCGGTAGACATGGACTTCATCACCTACTACTGCCCCAAGTGCAACAAGAACTTCGACTCACACGCCTTCTGGCGCAAGCACATCGTGGAGCATCACAACTTCAACAGCCGCGAGGGCCTGAATTTCCGGCAGATTGACATCCACCACTACTTGTGCCTGGAGTGCTACAAGCGCGTCACCGTCACTCACACCAAGGGCGCCATCGGGCAGCTCCAGTCGCACAAGTTCCGCCACCTGCCCTACCGCTCCTTCAAGTGTCTCACATGCAACGGAGAGTTTGTCCGCAAGCAGATGTTCTTCAAGCATCTCAATCGGGACACCAATCGGTGCGACAACAAGCCCAGCGCCGAGGAGGTGTTTGATGACGAGGAGCAGGATGCGGTTGGTGTTACCTCCGCGGAAGATGAAGACCTTGAAGCCTCTGCCTATCAACTGATGTGCCCGCAGTGCGGCGACGACTTCACCACTAGCAACCAGGAGGTATGGCGCAACCATCTCAACGGCTTACACGGCCTGGACAAGCAGCTTCTGCACATTCGGAAGGTAGGCGAAGGGCTCTACCGCTGCCACGACTGCGACGAGGAGTTGGCTACGAAGAGCAAGCGTGTGCTGCAACAGCACCGCTTCAAGCATATGCCCCATGCCGGCTACATTCGTTGCCAACTTTGCGAGAGCGGGACGGATGAGAAGGCGGCTGAAGTGCACAGCATGCGGGAGCTACATCAGCACATCCGCGAACACCATCCGGCTGTGGACGAGAGCGACGAGAGGATGCAGAAGGTGCGCCAGCTAATGGACGAGGAGGAAACCGACGAGGCGAACAGAACACCAGCGACCAGCGACAATGAATCAGGCTCGACGGCGAACAATGGTCCATATATGCCGCTACCGCCGCATTTACTGGACGAGGCGGAAGATTTGGATTTCGAGGATCAGTATCTGCTAGGATAG
- Protein Sequence
- MEGMDLWTSMFSADFEEGEEEIEQYANENGLDSNPAGDSDDILPEGDGDDEDEENEEEEDDDANNDAEDDEEEGTGRGSRKIKEPDLDDDAIFDFDLEPIVSIGEPQPAPLLAPPGPLGAPVRPIHRHSLPRASQGQTRPKEVRLSGVLTRPTTSQINATDANGIPINYELGVIYICPACGAEFRQQDLWKRHMNQMHQFNTRRGLNFMALDKLYHRCLECNKRIAMHSRENLLKHKFTHLPFRCTKCYICKREYKYRQDLMVHLRMVHCDEVVAMMREGFNLAGRKTRVREPRTEQMLRKDPFPEEVDERNDLLEPETETMTPMLEEEAPQRRRKKRYQGGPSGDGGADLCEDYIHYMCPDCGTECDTHAQWSQHIEFVHDYVSRRGLNFISVDMQMQCLECKKIVIPNTIKTLRAHKFTHLSQPEWLRCKLCYKGYTEHHELVTHLLKQHHLESLMPEESEPDSSPVKRTDGGGGGGGDDWEDIGNGNVFDDVSPHFEDVPRRGGRIGSDDMYEPHIDYLCPQCGKEFIEKKHWRTHVVQVHGMNDVTKLNFAIINERQLKCTECAKIITNAYGIQNAQQHRITHLPFKAYARCRKCHKSYTDRKGLVKHLATYHRVGYVPRKSLKRAGRAGPLFASPKQQRKQIVTLGKETYEIIFLDEEQTHSSVDEENDFGEQMQMPDEEDLPTVSAGVPPPNPNRYKCVECPTLFPTQVALKLHISEAHAFRDPPQYGASMKLDKSQGKEEAPKKRRLGAGPAPASIPSSLSSSSLAPTSSPSLGTVEQNYIFLCPSCGEEYKTQFEWRRHINEAHNFDKRQYLNMRQLDKYRYQCTQCNDIVCNSKLKGLQDHHFRHLPFRLYLKCLVCGTCYNHKPNIAAHLRTRHNIYERETPWRELHTKPQYSYVQSKEKDRDTAVKSRPQSPSHAVAVVPSSSGSSSSSRPLWPQSEKRPTRPAGLNTLEDSISYHNAVDMDFITYYCPKCNKNFDSHAFWRKHIVEHHNFNSREGLNFRQIDIHHYLCLECYKRVTVTHTKGAIGQLQSHKFRHLPYRSFKCLTCNGEFVRKQMFFKHLNRDTNRCDNKPSAEEVFDDEEQDAVGVTSAEDEDLEASAYQLMCPQCGDDFTTSNQEVWRNHLNGLHGLDKQLLHIRKVGEGLYRCHDCDEELATKSKRVLQQHRFKHMPHAGYIRCQLCESGTDEKAAEVHSMRELHQHIREHHPAVDESDERMQKVRQLMDEEETDEANRTPATSDNESGSTANNGPYMPLPPHLLDEAEDLDFEDQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00518011;
- 90% Identity
- iTF_00518011;
- 80% Identity
- -