Basic Information

Insect: Drosophila algonquin
Gene Symbol: -
Assembly: GCA_035041765.1
Location: JAWNKY010002018.1:2821560-2824745[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00041 0.034 14.8 5.2 1 23 175 198 175 198 0.97

2 16 0.00028 0.023 15.3 2.4 1 23 237 260 237 260 0.96

3 16 0.0048 0.39 11.4 5.9 1 23 325 348 325 348 0.96

4 16 0.00063 0.052 14.2 1.1 2 23 406 427 405 427 0.97

5 16 6.5 5.4e+02 1.6 1.1 1 20 540 559 540 561 0.88

6 16 0.014 1.1 10.0 0.5 1 23 570 592 570 592 0.94

7 16 0.00017 0.014 16.0 0.7 1 23 599 622 599 622 0.96

8 16 0.00072 0.06 14.0 0.8 2 23 631 652 630 652 0.95

9 16 0.0034 0.29 11.9 0.1 2 20 679 697 678 702 0.90

10 16 0.004 0.33 11.7 1.2 1 23 737 760 737 760 0.95

11 16 2.8 2.3e+02 2.7 1.2 3 22 769 788 767 788 0.95

12 16 0.006 0.5 11.1 1.5 1 23 797 820 797 820 0.97

13 16 3.8e-05 0.0031 18.0 0.1 1 23 842 865 842 865 0.97

14 16 0.036 3 8.7 0.2 1 23 875 897 875 897 0.94

15 16 6.1e-05 0.005 17.4 3.7 1 23 903 925 903 925 0.99

16 16 6.3e-06 0.00052 20.5 3.2 1 23 931 953 931 953 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00041	0.034	14.8	5.2	1	23	175	198	175	198	0.97
2	16	0.00028	0.023	15.3	2.4	1	23	237	260	237	260	0.96
3	16	0.0048	0.39	11.4	5.9	1	23	325	348	325	348	0.96
4	16	0.00063	0.052	14.2	1.1	2	23	406	427	405	427	0.97
5	16	6.5	5.4e+02	1.6	1.1	1	20	540	559	540	561	0.88
6	16	0.014	1.1	10.0	0.5	1	23	570	592	570	592	0.94
7	16	0.00017	0.014	16.0	0.7	1	23	599	622	599	622	0.96
8	16	0.00072	0.06	14.0	0.8	2	23	631	652	630	652	0.95
9	16	0.0034	0.29	11.9	0.1	2	20	679	697	678	702	0.90
10	16	0.004	0.33	11.7	1.2	1	23	737	760	737	760	0.95
11	16	2.8	2.3e+02	2.7	1.2	3	22	769	788	767	788	0.95
12	16	0.006	0.5	11.1	1.5	1	23	797	820	797	820	0.97
13	16	3.8e-05	0.0031	18.0	0.1	1	23	842	865	842	865	0.97
14	16	0.036	3	8.7	0.2	1	23	875	897	875	897	0.94
15	16	6.1e-05	0.005	17.4	3.7	1	23	903	925	903	925	0.99
16	16	6.3e-06	0.00052	20.5	3.2	1	23	931	953	931	953	0.98

Sequence Information

Coding Sequence: ATGACCCGGACCTGCAGAATCTGTGGCGATGCAAATGGACGCTACTGGGTCGAGACGCCGGTGGAGAAGTATGCCGAGAAGACCTTCAGTCAGATTTTGCTGGAGCTAACCAAGATTGAGTTGACCATGGTCCAGGCCGAGAAGTTGCCCCACTGGCTGTGCTCCAGTTGCTCCCAGAAGCTGGAGAACGCCTACGATTTTGTGTTGCAAGCGAAACAGACGCACAAACTGTGGCTGCAACAACTGGAGGATACGGGGCAGATAATGAGCTCTGGGGGATCCTTGGAGTGCCTGCGGGAGACCCCTATACATCTGTTTGAGATCGAGGGAGCTGCCATCAAAACCGAAGCGTTAGAGTCAACGGTTGCAGATGCCGGGGATAGCTCCTGCGATCCTCTAGTCCGCACACGCATCAAAAAGCGTACCATCTTTCACTTCAGCGATACGGAAGATGACCAGGATGATGTGCCGCTTAGGCAACGCAGGACGGGCAGCCAAGCGAACAGCTCATCCGCAAAGCTGCACAAGTGCAATCTGTGCGAAAAATCCTTTAGATATATCACGAATCTCTATCGCCACAAGAAAAGAGATCACGGGCAATCAAAAAGTGAGAGCACCGAATCATACCCggaaaagaaaccaaaaagcgCCGTGCAGGATAGCTCCAATTTGGAacaaaacgatgatgatgaggatgatgacaGCTACTACAAATGCGATCAGTGCGACAAATCCTACAAGCACATAATGTTGCTTATCAAGCACAAGCAAAATGCCCATGAAGCTAGTCAACAGCCAATCCAATCTGGGGCCAAGCGAAGAAACAGAAGGGACGTGGGTGAGGCAACAAGTCCAGCTCCTTCCGGGAAATACACACAACGAGCCAGAATCAGCACCGATACCCTGGTCCATAGCCTCATCAAAGAAGTCGAGCTTTCGGATGAGGATGCAAACAGCGGCAGCGATAACTACTACAAGTGCGATCAGTGCCACAAATCGTACAAATACATTGTAAGTCTCAtcaagcacaagcacaaggaACATTCGGAAGCTGACAAAAACTGGGACGACGAGGACAATCAACCATTGGCCTCCACTTCTGCCTGCGCCACTGTCGCCTCAGGCTCAGGATCTCCCACGAAGGCCTCGCGAATCAATCGTCGCGTTCAGGACTTCGACCTGCATCGCTGCCAGCCGAACGGTGCGAAGGAAATTCAGTGCATGATCTGTCTGCGGAAATTCACTAAATTGCGTGAGCTGAGAGATCACCTCAGGTCGCATCCAACGGACTTTAATTTCCAGGCGCACGGTGAGCCCATCGAACGCATTGCCGAGGGTTTCTTCAAAACGGCTGTGGAGTCCACTGTGGAGGGTTTGAAGAGCAGAATTCTGCACGATCTAAGGATAGGTGCTTTCGGACGCTTCTATTCCATTACCAACGAGGCGCGCTACGAGATGAGTCTGGACAGCTCGGACACGGATAGCGATGGCGATGCAGATGTTGTACTGAGACGAAGCTATGCCTGCGAGCTATGCGACTCTCCGGAGGCCAGGTGGCCGCGCAAGTATCAGCTGCACGAGCATCACAGACAGCAGCACACCTGGGAAGAGGCTCCGCATGTCTGCCAGCGCTGCGACTCGCGTTTCCTCAGTCTCCAGCTGCTGGAACATCATACCCTACAGCTCTGCCAGAACACTCTGAAGCGATACATGTGCGACAAGTGCCCGCAGCGCTTCTTTTGGCGAAGAAATCTGCGTGCCCATCTGGTGGAGCACAAGAGCAAGCAAGACAGCTATCCGTGCGACCAGTGCCAGCGTAGCTTTCAGGATAAAAGCGCCGTGACCAAGCACAAGCTGATGATGCATCGCGATGAAAAGAATCAGCTTATTCCCTGCCGCTGGTGCTCACGGACCTTCTATCGTCCCGCCCTTCTGCACAAGCATGTCGAACGGCATGGCTTCACCGGTGACGATTTGCCCCTGGCAGAGACATTGCTGGCCGATGCAGCCAAGCCGTCGGGCCCAAAGACAGTCCAGTGCAAGATCTGTGACCTGCAGTTCGTAAGCGTGGCAGATCTGCGTCGCCACAATGCCATGCTGGGCCACAGTGAGCGCCTAACCGAGTACATGATCAGCACCGAGGCTGGCTTCGAGCTGTTATTGGAGGACACAGATGACAGCGATGACGACACTACGGGGGGCAGGTCCTACTCCTGCGATCTCTGTCAGATGACGTTCCGTCGCCGCAGGGAGATAAGCGAGCATCAGTATTCACTGCACGCCTTTGACAAGTTGCCATATGGCTGCAAACATTGCATTTATAAGACCGTGGATAAGCTCATGTTGGAGCATCATCTGCGCACACAATGCCTGAACAACGAGAAGCCATTCAGTTGCTCCCGCTGCAAATACAAGTTCATGTGGAAGGAGAACCTGGAGCAGCACATGGCCACTCAGCATCCCAAGCAGCCGCCCACCCAAGAGCAGTCGGCCATGCCCTTGAGGAGAAGACGACGCTTCAGATATCAATGCCCACAGTGCTGGCGCTCGTTTGTGGTGCAGCCCAGCCTTGATAAGCATATAAGAGACATGCATGTGGCCAAGAGGAATCCGGGCAAGAAATACCTCTGCTCCCTCTGTGGCCTGGAGTCGCTGACGCCCAACAAGCTGAACATCCATATGCGTCGCCACAACGGAGAAAAGCCCTTCAAATGCGATCTCTGCGACATGCGCTTCACAGTCCACTACGAGCTGAAGGTCCATCGACGGAAGCACACCGGCGAGCGGCCCTACCAGTGCACCTTCTGTGACAAGCACTTTGCGCGACCCGACAAACTCAGACGGCATGTCTACATGCACAGTGCTCGTCGCTAG
Protein Sequence: MTRTCRICGDANGRYWVETPVEKYAEKTFSQILLELTKIELTMVQAEKLPHWLCSSCSQKLENAYDFVLQAKQTHKLWLQQLEDTGQIMSSGGSLECLRETPIHLFEIEGAAIKTEALESTVADAGDSSCDPLVRTRIKKRTIFHFSDTEDDQDDVPLRQRRTGSQANSSSAKLHKCNLCEKSFRYITNLYRHKKRDHGQSKSESTESYPEKKPKSAVQDSSNLEQNDDDEDDDSYYKCDQCDKSYKHIMLLIKHKQNAHEASQQPIQSGAKRRNRRDVGEATSPAPSGKYTQRARISTDTLVHSLIKEVELSDEDANSGSDNYYKCDQCHKSYKYIVSLIKHKHKEHSEADKNWDDEDNQPLASTSACATVASGSGSPTKASRINRRVQDFDLHRCQPNGAKEIQCMICLRKFTKLRELRDHLRSHPTDFNFQAHGEPIERIAEGFFKTAVESTVEGLKSRILHDLRIGAFGRFYSITNEARYEMSLDSSDTDSDGDADVVLRRSYACELCDSPEARWPRKYQLHEHHRQQHTWEEAPHVCQRCDSRFLSLQLLEHHTLQLCQNTLKRYMCDKCPQRFFWRRNLRAHLVEHKSKQDSYPCDQCQRSFQDKSAVTKHKLMMHRDEKNQLIPCRWCSRTFYRPALLHKHVERHGFTGDDLPLAETLLADAAKPSGPKTVQCKICDLQFVSVADLRRHNAMLGHSERLTEYMISTEAGFELLLEDTDDSDDDTTGGRSYSCDLCQMTFRRRREISEHQYSLHAFDKLPYGCKHCIYKTVDKLMLEHHLRTQCLNNEKPFSCSRCKYKFMWKENLEQHMATQHPKQPPTQEQSAMPLRRRRRFRYQCPQCWRSFVVQPSLDKHIRDMHVAKRNPGKKYLCSLCGLESLTPNKLNIHMRRHNGEKPFKCDLCDMRFTVHYELKVHRRKHTGERPYQCTFCDKHFARPDKLRRHVYMHSARR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00575022;
90% Identity: iTF_00481028;
80% Identity: -