Dalg001695.1
Basic Information
- Insect
- Drosophila algonquin
- Gene Symbol
- -
- Assembly
- GCA_035041765.1
- Location
- JAWNKY010000238.1:551975-554503[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.5 3.7e+02 2.1 0.9 2 23 125 147 124 147 0.92 2 13 0.012 1 10.2 4.8 2 23 170 192 169 192 0.95 3 13 6.9e-05 0.0057 17.2 3.0 2 23 199 221 198 221 0.96 4 13 0.0089 0.74 10.6 9.1 2 23 446 467 446 467 0.97 5 13 1e-06 8.3e-05 23.0 1.2 1 23 473 496 473 496 0.96 6 13 0.00052 0.043 14.5 0.3 1 23 501 524 501 524 0.93 7 13 5e-05 0.0042 17.6 5.5 1 23 542 564 542 564 0.96 8 13 0.00085 0.071 13.8 1.1 1 23 569 591 569 591 0.97 9 13 2.6e-05 0.0022 18.5 1.7 1 23 597 619 597 619 0.95 10 13 1.9e-05 0.0016 19.0 0.7 1 23 625 647 625 647 0.98 11 13 2.8e-07 2.3e-05 24.8 2.7 3 23 655 675 654 675 0.99 12 13 4.9e-08 4.1e-06 27.1 1.9 1 23 681 703 681 703 0.99 13 13 0.31 25 5.7 3.4 1 19 708 726 708 731 0.89
Sequence Information
- Coding Sequence
- ATGGCCGCGTCAGCCCAACCAGTGGCGGCGGGCGGTAGCTTCGATTTCGATGCTGAGATTGTCTGCCGGATTTGCCTGCGCAGTGTGGCGGTGGGCGAGGAGATGCACTTCATCTACGACGAGGCGCCTGTGGAGCAAGGAGCCAATCTCGTCCAGATACTGAACGAGTGCACGCGCTACACCTGCGACCGATTCGACGACAAGATGCCGCATAAAATGTGCGATCTGTGCATCAAGGCGGCCCGCCACGCCTACCGTTTCAAGCTCGACGCGGAAAAGTCCTATAGCTCCCTGATGGCACTGCTGGGACGCACGCTTAACAGTAGCATAACCATCGATGTGTGCACTCAAACAGATCAGGTGGCCCTCCTGCCCTGCGAAATGTGCCACGACCAGTTTCTGAACAGCCTGGAGCTGCGACTGCATCGGAATAGGGTGCACAAAACAAGAGACAGCGGCAATAGTGCTACTCCTAGTGATGGGGGAGTGGCGGTGGTCCAGCAACTCAAGTGTAAGTTCTGCACGCAGAATTTCCCGCATCTGCGCCAGCTCCGAGCTCATCTAGCACGGTGTCATAACCAAACGGAGCGTCTTCAGTGTCCCCACTGCCAGTCACCCTTCACCCGCAGGGATCATATGCTTCGTCACATACGCAACATACACAAAAAGGAGCCAGACAGCACCTGGCCACTGCAGGACGAGGCCACAATGCAGAGTTCTGCCGGCGATGAGCTCGTTTCCGCCGAGGTCTTGCTCAACGAGGACGAGAATGATGAGGGCGATGCCTATCTGTGCAATATCAATCCCATATCCAGCAATGAGGAAGAGGACGAGGTCAATGACGAGGCCAAGAAAGTGCTGTGGCTCCACATTAAGCCGGAGCCCTGCCTGGAAGCCGAGGATATTGATCTGAAGCTCGAGAAGAAACTCCGACGGCGGAAGAGAAGACTGAAACCGAGGAGCGGGAAACCTCTACCGATACCGCCCCTGTCAAAGATGAACCTTTGCCCAGCACAGAACCCGCTCAGACGACGCTGCACATCAAAGAGGAAAGCCAGCCGGCAGCTGGCAGCCCAGCCCGGGGGAGAGGAGGATTTGCCTCTCAGtgatgaggaggagggggaggacgAAGAGCAATACGATTATGGTGATGGAGATGAGGAGAGCGACCTGGATGACGAGGACAACGATGAGGATGATGGAGAAGAGGATGATGCCCCTCCAGAAGACGTCGACAAATCCAATATGGATATCGTGAGTGAATATCTGAGAAAATCGAAGCCGACAAAGCGACGGCGTCGCAACAAACAGAGCAGCGAACCCAATCCGGAGAATCGATGCGATGTCTGTCAGCGAACATTCtcccgccactgccacctgCTGCGGCATAAGCTCTCCCACCTGGAGAAGAAGCCGCACAGCTGCCCGCAGTGTCCCAAGGCATTTGCACGCAGCGACCATCTGAAGGCCCATGTCCAGAGCCTGCACAGCAACAAGGAGCACAAATGTACACTATGCGAGGCCGCCTTTGCTCGTCCCGAGGCTCTCGAGCGGCACAAGGTGAGCAAGCATAATGGCGAGGGCCTGGAGGCGGGCAGCGAACTGAAACTCCAGCTGGCGGAGCACACTTGCGAATACTGCTCGAAGCGTTTCTCCAGCAAGACGTACCTGCGCAAGCACACGCTGCTCCACACCGATTTTCTGTACGCCTGCAAGAGCTGCGAGGAGACCTTCAAGGAGCGCCAGCAGCTGCGCGAGCATGAGAAGAGCCACACTGGGCAGCGCAATTTCCTGTGCTGCATCTGTGGCGATAGCTTTGCCCGCAACGATTACCTGCGGGTGCATATGCGGCGGCATAATGGCGAGAAGCCGTACAAGTGCCGCTACTGTGTGAAGGCCTTTCCCCGGGCCACCGATCTCAAGGTGCACGAGCGGTATCACACGGGCACCAAGCCCAATCTGTGCAATACGTGCGGCAAGAGCTTCCATCGGGCCTACAATCTAACCATCCACATGCGCACCCACACGGGCGAGCGGCCGTACAAGTGTGACCAGTGCCAGAAGAGCTTCACCCAGAGCAATGACCTCAAGGCCCACATACGTCGGCACACGGGCGAGCGGTACAAGTGTCCGCACTGCGATGCCTACTTCCTGCAGCTGTACAACATGAGGAACCACTGCCTGAGTGCCCACAACAAGCATATCGAAACGAAGACGGGTCGCCTGCAGCGTACAGGTCTCCTCGAGGATGGCACTCAATCCCATCTGACTACCGTCGTGATGCCCCCGTTCGCTatcagtcgtcgtcgtctgggCAGGATCCCAACCAAATGGAGCCACAAATGGTGGCTGTAA
- Protein Sequence
- MAASAQPVAAGGSFDFDAEIVCRICLRSVAVGEEMHFIYDEAPVEQGANLVQILNECTRYTCDRFDDKMPHKMCDLCIKAARHAYRFKLDAEKSYSSLMALLGRTLNSSITIDVCTQTDQVALLPCEMCHDQFLNSLELRLHRNRVHKTRDSGNSATPSDGGVAVVQQLKCKFCTQNFPHLRQLRAHLARCHNQTERLQCPHCQSPFTRRDHMLRHIRNIHKKEPDSTWPLQDEATMQSSAGDELVSAEVLLNEDENDEGDAYLCNINPISSNEEEDEVNDEAKKVLWLHIKPEPCLEAEDIDLKLEKKLRRRKRRLKPRSGKPLPIPPLSKMNLCPAQNPLRRRCTSKRKASRQLAAQPGGEEDLPLSDEEEGEDEEQYDYGDGDEESDLDDEDNDEDDGEEDDAPPEDVDKSNMDIVSEYLRKSKPTKRRRRNKQSSEPNPENRCDVCQRTFSRHCHLLRHKLSHLEKKPHSCPQCPKAFARSDHLKAHVQSLHSNKEHKCTLCEAAFARPEALERHKVSKHNGEGLEAGSELKLQLAEHTCEYCSKRFSSKTYLRKHTLLHTDFLYACKSCEETFKERQQLREHEKSHTGQRNFLCCICGDSFARNDYLRVHMRRHNGEKPYKCRYCVKAFPRATDLKVHERYHTGTKPNLCNTCGKSFHRAYNLTIHMRTHTGERPYKCDQCQKSFTQSNDLKAHIRRHTGERYKCPHCDAYFLQLYNMRNHCLSAHNKHIETKTGRLQRTGLLEDGTQSHLTTVVMPPFAISRRRLGRIPTKWSHKWWL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00474649;
- 90% Identity
- iTF_00480997;
- 80% Identity
- -