Dalg013563.1
Basic Information
- Insect
- Drosophila algonquin
- Gene Symbol
- -
- Assembly
- GCA_035041765.1
- Location
- JAWNKY010002749.1:1583-4985[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0036 0.29 11.8 0.9 1 23 71 94 71 94 0.97 2 19 0.0022 0.19 12.5 0.3 2 22 104 124 101 124 0.90 3 19 5.5 4.5e+02 1.8 3.8 1 23 133 156 133 156 0.91 4 19 0.00068 0.056 14.1 1.6 2 23 182 203 181 203 0.97 5 19 5.4e-06 0.00045 20.7 2.5 1 23 211 233 211 233 0.99 6 19 0.026 2.2 9.1 2.1 1 23 386 408 386 409 0.94 7 19 0.017 1.4 9.7 0.4 2 22 417 437 416 437 0.95 8 19 0.024 2 9.2 0.6 1 23 446 469 446 469 0.90 9 19 1.1e-05 0.0009 19.7 1.2 2 23 492 513 491 513 0.97 10 19 8.5e-05 0.0071 16.9 1.2 1 23 520 542 520 542 0.98 11 19 0.018 1.5 9.6 0.0 2 21 569 588 568 589 0.93 12 19 0.0072 0.6 10.9 3.9 1 23 635 658 635 658 0.96 13 19 0.0041 0.34 11.6 0.5 1 23 695 718 695 718 0.96 14 19 0.00017 0.014 15.9 1.5 1 23 742 765 742 765 0.97 15 19 3.3e-06 0.00027 21.4 0.2 2 23 793 814 792 814 0.95 16 19 9.2e-05 0.0076 16.8 2.9 1 23 820 842 820 842 0.99 17 19 2.2e-06 0.00018 21.9 2.0 1 23 848 870 848 870 0.97 18 19 1.2e-07 9.5e-06 26.0 2.4 1 23 876 898 876 898 0.99 19 19 0.00078 0.064 13.9 0.1 1 21 904 924 904 928 0.91
Sequence Information
- Coding Sequence
- AAATCTGCCTTCTTCCGTTCTTACTATCCCAACGGATTGGGCTGCAGCCTCTCAGAGCTGAGCTCCCGCATAGCTGGGGATTATGAGGCCAAAGACTTTGGACGCTACTACAACGCCTGCACGGGAAGTGGTCAAGAGCTGGATCTCTTTGACTCTGACACGGAGGAGACcgatgaggcagacaaaacagaGGAAAAGCCGAAACCCTCGCACACCTGCCTGCTCTGTGGAGAGACAACTATTCGTCTGCTCAAGCTGCTGCGACATCAAAGGATACTCCACTCCGAAGAGGGCACCACGTACCCCTGCTCATGCCAGTATTGTGGCGCTGGCTTCGTCTCAGAGCCCTTGCTTCAGCAACATCGAAGACGTTCCTGTGCCAAAAAGCACTCGAAATACCAATGCCAGCGATGCAATCTTCATTTTGTATGGCAATCGAACCACGAGCAACATCTGCAATTGTACCACGACAAGGACGGGGATCAGGAGCAGTCGGAGGACTGCCAGCAGGGTGGAAAACATAAATCTTCGGCTGCCAAGCTTCAGTGCGATGAATGTGAAAAGGTCTTCATTTGGCACAAGGATCTCACCCGTCACAAGCGAATGCATCGCCCGCCGTCGGCAGCCCAATACGAGTGTGCCTATTGCGACCGGAAGTTCCACCGCAAAGATGGCCTCAAGTCCCACCTGCGGGTGCacaacgagcagcagcaggagacagTGAATGAGGAGCCGTCTTGCGCCCAATCGACCTCTACGAACAGTATTCAGAGAATGCCCGGGGAGCAGCTGACCCAACTATGCCGTCCAAATGGTTGCAAGCAAATCCAGTGCATGATTTGCCTATCGCGTCACTCGAAGATCGCCGATTTGAGAAATCACCTAAGCACGCACCAATATGGTGTGTGCTTTCCACAGGAGAGAGATATTCCCAGTGCCTCGCGCTCGTTGTATCCGGAACTGGGCACTGTTTTGGAtaagcaggagctggaggggAGGATCATGAGCGATGTGGCCGGCGGCTTGGAGTTGGAGCGATTCATTTCCATAACCAACGAGGCTGGCATTGAGCTCTCTCTTGAGAGCAGTGAAACGGAAACGGATTCAGAGCAGGACGAGGATGACGAGAGTTCCGAGGAAGCTGACCAGCAGCGGTACGCCTGCAACATCTGTCAGGTGGAGGTGAGGCGAAAGCATCAAATGTATGCCCATCAGTTAGACCATCACCAGTGGGAGGAGGCTTCGCTTGTGTGTGCCCACTGTCAGGCGAGATTCGTGAGTGTAACGCTGCTGGAGCATCACTACAGAACCCTCTGCCGGAACCCACAGAAGCGTTTCCAGTGCCGAAAGTGTCCGCTACGCTTCCGCTGGCGGGAGAACCTGAAGCTGCACGCAAGTGCCTCCCATCAGCAAATTGGACAGCCCCAAGCTGCAGAGGAACAGAGGAGCGGCATCCAGACTGAGTTCGACCTGCAGTGTGGAGAGTGCAATCGCAGCTTCAAGATGCAGAAGGATCTCACGCGGCATACGCTGATGCATGCCCAGGAATCGAGCATATATCGTTGTCGTTGGTGTGCCCGCCGCTTCTACAGGAAGGCCAATCTCCTGCAGCACATTGAGCGGCATGGCATCGGAGCTAGCCAGCTGCCCTACGCGGAAGCTCTCCTCAATGCCTATGGTCAACCGAATGGCCAGAAGAGCGTGGAGTGCAAGGTGTGCAGCTTGAGCTTTCCCAGTATTGCTGCACTTCGCGTCCATCTGGAGACCACGGCGACGGGCAGTCACCACGAACTATCGTCCCTACAGAACTACTCGATAACCAACCAAATGGGATTCGAGCTGCACTTGGACGACTCGGAGACGGATGAGGAGGAGTCCAAGCCACCGGGCACGCCTGCTGTCTACACCTGCGGCATGTGCCAGCTCCGGTGTGTGCGAAAGTACGAGctgcatcagcaccagcaggcCATGCACAGGCTGGAGAAGATCCCCGATGGCTGCAATCTGTGCATTTTCAAGAGTGTCTCTCCCGATCTTATCGCCCATCACAAGCGAGTGCAGTGCCACAACCGCGAGAAGCAGTTCACCTGTGCCAAATGCGGCTACAAGTTTATGTGGGAGTCCAATCTCCTGCTGCACATGCAGCTGCAACATGGCAAGGCCGAAGAACAGGATGATCCACCTCTGGACGAGCCCGTGGAGCAGAAGGCTGTGTGCCCAGTTTTTCAGTGCGGCCTCTGCCCAAGGAAATACAATCGCAAGGATCGGCTGACGGCCCATGTGAAGAAGTTCCACAACCCAGTGGTAGGGAGCGCTCCGAACACCATAAGGACTGCTCCCATCCGGCCAACTTCGCCCAAGGAGCCGAAACGCTTCCTATGCGCCTTCTGTGGCAAGGCTGTAAGCTCCTCCTCGAACCTCATCATCCACATGCGTCGGCACACGGGCGAGAAGCCTTTCAAGTGCGACTACTGCGAAATGGCCTTTCCGCGCTCCTCCGATCTCCAGTGCCATCGACGAACGCACACCGGGGAACGGCCCCACATCTGCACCGTCTGCCAGAAGGGCTTCGCCAGATCCTAcaaactgcagcagcacatGCGCATCCACAACGGCGAGCGGCCCTACAAGTGCACCTACTGCGAAAAGAGCTTCACCCAGTCCAACGACCTGACACTCCACATCCGCCGCCACACGGGCGAGCGTCCCTATCAGTGCGGGGTCTGTGGCGAGCGTTTCATCCAGGGTACGGCCCTGAAGAATCATCGCCTACAGCAGGGCCACTATGACGAGGCCAGCCAAGGCGCGGCAGAGTCCGCAAGACGCACGGTCCTAGAGCAATTTACAGTTGAATAA
- Protein Sequence
- KSAFFRSYYPNGLGCSLSELSSRIAGDYEAKDFGRYYNACTGSGQELDLFDSDTEETDEADKTEEKPKPSHTCLLCGETTIRLLKLLRHQRILHSEEGTTYPCSCQYCGAGFVSEPLLQQHRRRSCAKKHSKYQCQRCNLHFVWQSNHEQHLQLYHDKDGDQEQSEDCQQGGKHKSSAAKLQCDECEKVFIWHKDLTRHKRMHRPPSAAQYECAYCDRKFHRKDGLKSHLRVHNEQQQETVNEEPSCAQSTSTNSIQRMPGEQLTQLCRPNGCKQIQCMICLSRHSKIADLRNHLSTHQYGVCFPQERDIPSASRSLYPELGTVLDKQELEGRIMSDVAGGLELERFISITNEAGIELSLESSETETDSEQDEDDESSEEADQQRYACNICQVEVRRKHQMYAHQLDHHQWEEASLVCAHCQARFVSVTLLEHHYRTLCRNPQKRFQCRKCPLRFRWRENLKLHASASHQQIGQPQAAEEQRSGIQTEFDLQCGECNRSFKMQKDLTRHTLMHAQESSIYRCRWCARRFYRKANLLQHIERHGIGASQLPYAEALLNAYGQPNGQKSVECKVCSLSFPSIAALRVHLETTATGSHHELSSLQNYSITNQMGFELHLDDSETDEEESKPPGTPAVYTCGMCQLRCVRKYELHQHQQAMHRLEKIPDGCNLCIFKSVSPDLIAHHKRVQCHNREKQFTCAKCGYKFMWESNLLLHMQLQHGKAEEQDDPPLDEPVEQKAVCPVFQCGLCPRKYNRKDRLTAHVKKFHNPVVGSAPNTIRTAPIRPTSPKEPKRFLCAFCGKAVSSSSNLIIHMRRHTGEKPFKCDYCEMAFPRSSDLQCHRRTHTGERPHICTVCQKGFARSYKLQQHMRIHNGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYQCGVCGERFIQGTALKNHRLQQGHYDEASQGAAESARRTVLEQFTVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00471775;
- 90% Identity
- iTF_00471775;
- 80% Identity
- -