Dalg017990.1
Basic Information
- Insect
- Drosophila algonquin
- Gene Symbol
- baz-2
- Assembly
- GCA_035041765.1
- Location
- JAWNKY010003561.1:252047-253020[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.13 1.8e+02 2.0 0.0 5 31 7 32 4 35 0.77 2 2 5.4e-15 7.8e-12 44.8 0.0 1 76 115 190 115 191 0.93
Sequence Information
- Coding Sequence
- ATGGAAGGAGCTTCTGATAGCGGTCTGCATTCTTCTCGCCCCCCGGCGTGGGAACGGGACTCTACAGTCCGCCTGTCCCATCATATGGGTGGCAAGGAGGTGCGCGATCTGACCAGCGATCATGCAATCCCCCGCTCGGGTGGCTTCAATCCCAGCCTGAAGTCGACGTCCAGTTCGTTGACGCCTGCCGCCACAGGGGCCGTCGGCGTGGTCATAAATCCCTCGGACAAGAACAGCGACGGCGCCCCAGCGACCACCACTTCCTTATCCAGCACTGCGTTGGCCTACATGGCCAGTAGTGAGTATCAGGCGGAAACTTCAACGGAGAGCGAGGATGCCAACATACACAATGTGTCGGAGCTGCGAGTGCCCCTGGATATGGGCTGGAAGCGAGACACTGTCATCCGAGGCCTGAACGATCTGGGACAGATCCGTGGGGATGTCACCTACTATGCACCGGGCAGTGTGGCGCCTCTGAAGACCATTGGACAGGTTTCTGCTGtcctggagcagcagccatcCAATCTGACGCGCGAGAATTTTAGCTTCTCCCCACGGACCAATGTGGGATCGTTTTCGTCGACGCCCACCCAGCATAGCATACAGATAGCTACAGTCCGGCTACAGTCCGGCTACAGTCCGGCTACAGCCGACGACGTGCAAGGCGCCAATGAAGCGGTCCATGTTTTTGGGTTTGCAATCgcgcggaggcagaggcagcagcagctcctccgagcagccacagccgacCAAGATCTCCAAGACAGGGCAATCCGTGgcctcctcgtcgtcgcccAACTCATACAATGGAACACCATCTCCCACACCGGATCCACCAGCACCATCTCCCACACCGGATCCACCAGCACCATCTCCCACAGACAATGA
- Protein Sequence
- MEGASDSGLHSSRPPAWERDSTVRLSHHMGGKEVRDLTSDHAIPRSGGFNPSLKSTSSSLTPAATGAVGVVINPSDKNSDGAPATTTSLSSTALAYMASSEYQAETSTESEDANIHNVSELRVPLDMGWKRDTVIRGLNDLGQIRGDVTYYAPGSVAPLKTIGQVSAVLEQQPSNLTRENFSFSPRTNVGSFSSTPTQHSIQIATVRLQSGYSPATADDVQGANEAVHVFGFAIARRQRQQQLLRAATADQDLQDRAIRGLLVVAQLIQWNTISHTGSTSTISHTGSTSTISHRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -