Daff003141.1
Basic Information
- Insect
- Drosophila affinis
- Gene Symbol
- fru
- Assembly
- GCA_037356375.1
- Location
- CM074799.1:23539125-23541263[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.9e-12 1.3e-08 34.7 0.1 1 44 407 450 407 451 0.91
Sequence Information
- Coding Sequence
- ATGGGCGGGCCCACAGCGCCCGTGGCCAGTAGCGAGGGCCAGACGTACTGCCTGCGCTGGAACAACCACCAGACTAATCTGGTGCAGATCCTGCATGCGCTACACGAGGTCGGCAGCTATGTCGACTGCACCCTAGTCGTGGACGATGAGCAGTTCAAGGCACACCGTGTGGTGCTGGCGGCAAACTCGCCGTACTTCCAACACATTCTGCAGGACGTACAACAGGACCAGTGCAGCATAATCCTGCCGGGCGTAAGGGGCTTCGAAATCGCAGCCTTGCTTCAGTATATGTACACGGGTGAGACCACGGTGACCAAGAGCCAGGAGCCGGAGATCCTGCGCACTGCCAAGGAGCTGCAGGTGAAGGGTCTCTACGACAATCTGATGAAGTACAATCACAAGGCGGCCAGCGCAGTTGAGGAGCGAGTCCAGAGCCAGTTCCATGCCAGCATCACGCCAACCTCCAGCTCGGGATTGGGCGCTGGCTCTGGCAATCCCCTTAACGGGTCTTCTGCTGACGGCTCCTTCggccagcagcaccacaaCTCCTCCTCCGTGATCTCAACGTCCACGCACATCTCGCCTAGCGCCGCCATCTCGAGCAGCTGTTCccctccgccgccgccattCGGAACCTACCAGCCGCCGTACACAAACTTCACGCCTGGATCAGGGGCTATTAATTCACATCCTCACATCCCAGCCGGTGAGACTCCCCTGACGCCAACCCATGCAGCTTCACACGCCGTAGCCGGTGAGGCCGGCCAGTGGCCCCTCTCGccctctgctgccgctgccgccatgCTAAACTCCGTGTATGAGTCCGCAGCTGACATGAATCCGCTTAAACGCAAGAAACTCTCGGCCATCTCCAGCATGCTACTCAACAGCACCCGGGACACTCCCATTCTGCGCAACGTACTGGCCCAGGCCAACCCAGCTGACTCCTCGCAGCCCAATCCTCTGCTGCTGAAGagctcctccacctcctccctAAACGAAAAGACACCCTCCCATCAGCACCAGCCCCCGCACCAGCACCACAGCGGAGGTGCAGTGGGAGCTGCCGTGAGCGGCGGAACCGGTAGCCATAGCTTTAACGGCTCAGACTACGGAGGCGACAAGGAGCCCCTATCACCTCACACGGACCGTTCCTTTGATGAGGAGACTAGCGGGCCGGGCGGTAAGAAGCCGGAGTGGAAGCGTTATAAGCAATACACACGGGCGGACATGATGTGTGCCATTCAGGCCGTTCGCGAAGGAATGAGCGCGCTTCAGGCGAGCCGCAAGTATGGACTACCCAGCCGCACCCTCTATGACAAGGTCCGCAAGCTGAACATCACTACGGGCCGTGGAACGCATCGCACTCCCAAGCGCAGTCCACCCGGAGTCGAGTCTTCCGCCGCCTTCCCCTACTCTgcggcagccgctgccgcagcTGCACACAACTACGGACATGTCCATGGGCATGGCCAGACGGATCTAGAGCGTGAGCCAAAGGAGCATGGCCAGCATAGTGGACATGGAGGCGGCCACCACGGTATGCCACCCACCATTCCCCACTCGGCAGCCGCCCTTCTCGATCACGCCTTTCTGCAGCAGGCCTTAGAGAATCGAGGCGGGGATATGGCAGGACGTGAAGCACTCCACGCAATGGCTCTGGCAGCGGCCGCCCACGCAGCTGCCAACCGAATGTCTAGCAGCCCCCAAGAGTCTGGATCAAATGGACATGCAGCCAGATCTCCAAGTCCAAGGGCTCGCCACTACTCCGATCACGAGGCCATGGAGTTAGAGATGGAAAAACACGAGCAGCGCCTGATCAAGAGGGAGCGTGACCAGGACGAGCGCGAAGACGCTGACGATGAAGATGATCGTGACCAGGAGCAGGATCAAGATCACGACCATGTGGAAGATCTCTCGCTGGCACGAAAAGAACGCCCCGAGTCGCCCTACTCTCCTCAGCCCCCACGGGCCTCCTCGCCGGTCGAGAGCGCCAGTGTGATTATGCACTCCAACAGGGCCTCCACCAATGGAAAGGACCACGAGGATTATCCCCATTCACCACCGCCAATGGccctgggtctgggcctgaAGCGGGAACTACTTGGCAGCGAGGAGTCGCAGCCCAGAACCGATTGA
- Protein Sequence
- MGGPTAPVASSEGQTYCLRWNNHQTNLVQILHALHEVGSYVDCTLVVDDEQFKAHRVVLAANSPYFQHILQDVQQDQCSIILPGVRGFEIAALLQYMYTGETTVTKSQEPEILRTAKELQVKGLYDNLMKYNHKAASAVEERVQSQFHASITPTSSSGLGAGSGNPLNGSSADGSFGQQHHNSSSVISTSTHISPSAAISSSCSPPPPPFGTYQPPYTNFTPGSGAINSHPHIPAGETPLTPTHAASHAVAGEAGQWPLSPSAAAAAMLNSVYESAADMNPLKRKKLSAISSMLLNSTRDTPILRNVLAQANPADSSQPNPLLLKSSSTSSLNEKTPSHQHQPPHQHHSGGAVGAAVSGGTGSHSFNGSDYGGDKEPLSPHTDRSFDEETSGPGGKKPEWKRYKQYTRADMMCAIQAVREGMSALQASRKYGLPSRTLYDKVRKLNITTGRGTHRTPKRSPPGVESSAAFPYSAAAAAAAAHNYGHVHGHGQTDLEREPKEHGQHSGHGGGHHGMPPTIPHSAAALLDHAFLQQALENRGGDMAGREALHAMALAAAAHAAANRMSSSPQESGSNGHAARSPSPRARHYSDHEAMELEMEKHEQRLIKRERDQDEREDADDEDDRDQEQDQDHDHVEDLSLARKERPESPYSPQPPRASSPVESASVIMHSNRASTNGKDHEDYPHSPPPMALGLGLKRELLGSEESQPRTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00611434;
- 90% Identity
- iTF_00517637;
- 80% Identity
- iTF_00471703;