Dqua037860.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022330.1:9162030-9169227[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.032 98 5.1 0.0 21 48 201 227 197 230 0.88 2 3 0.00014 0.44 12.6 0.1 23 43 231 251 225 258 0.90 3 3 0.001 3.1 9.9 0.1 22 48 258 283 252 285 0.88
Sequence Information
- Coding Sequence
- ATGGGTCATCATAGTTGTTGTGtagtaaattgcaaaaatacgGGCAGAAAcagtaaatataaattttatgctTTTCCAACCGCAAATTGGAAGTTGGAACAAAGAAGAAAATGGATTCTTGCTATAAATAGGAAAAAtgCTGATGGATCACCGTGGTGTCCAAAACGAGATAATTATATTTGCAGTGCTCATTTTGTTGGTGGTAGAAAATCAGAAGAGCAATCAAGTCCGAGTTACGTTCCATCAATATTTCCTTCACTTGATAAAGCATCCAAGGTTAATGAATCAGCAACTCTAAACAGgaactcaaataaaattgtacCAGATATAGcaacaaatgaaaaatgtgCTCAACAAGTAGCTACGGAAGATGATTTTGAATGTAAACAAGAGATATCTgatgaaaattatacaaatattttagacTCACCAAGTgaaaagaatgaagatataGTTCACAGTGAAGAGTttattattaaagaagaaaCAAGCGAAGAATTGGTATTAAATGATGAATTAGAATCATTACTACATGAGATTAAGAAAGAAAAGTCTGAATCAGATGACATATGTAACAAAAATCACAAACTTCTACACAGTGGTGAAAATCCATTTATTTGTAAACTTTGCAATCAATCATTTAGTCAACTGGAAAATTTGAAGCAACACAAATTGAAACACACAGATTATaaaccatatacttgtgaagtttgctaTCAGTCATTCAGGCAGTTGGGTGATTTAGAACGACATCGAATAACACACACTGGTAAAAAACCATTTACGTGTGACATTTGCAATACATCTTTTACTGCGAAAAGTAGCTTACAACGACATTTGAATATCCACTTCACatag
- Protein Sequence
- MGHHSCCVVNCKNTGRNSKYKFYAFPTANWKLEQRRKWILAINRKNADGSPWCPKRDNYICSAHFVGGRKSEEQSSPSYVPSIFPSLDKASKVNESATLNRNSNKIVPDIATNEKCAQQVATEDDFECKQEISDENYTNILDSPSEKNEDIVHSEEFIIKEETSEELVLNDELESLLHEIKKEKSESDDICNKNHKLLHSGENPFICKLCNQSFSQLENLKQHKLKHTDYKPYTCEVCYQSFRQLGDLERHRITHTGKKPFTCDICNTSFTAKSSLQRHLNIHFT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00469857;
- 90% Identity
- iTF_00469857;
- 80% Identity
- iTF_00469857;