Dqua061534.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022336.1:5437416-5439517[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 2 6.1e+03 -0.7 0.0 26 46 142 162 136 165 0.81 2 6 0.013 40 6.3 0.2 21 44 165 188 148 193 0.88 3 6 0.0065 20 7.3 0.2 21 45 193 217 189 221 0.90 4 6 0.011 35 6.5 0.1 22 52 222 252 219 252 0.88 5 6 0.045 1.4e+02 4.6 0.1 21 52 249 280 247 281 0.89 6 6 4.2e-05 0.13 14.3 0.1 23 44 279 300 276 308 0.87
Sequence Information
- Coding Sequence
- ATGAGTGAGGAAATAATAGTTTCATCCGATATGTACGAGGAAACTTGTGAATCAGATTCAGAACAAATGTGTACCTATTTCCCATTCATAAAAATAGAAAACGATGGTTCAATATTAATAGATGGACAGCCCAGTAGTCAAGATGCATCACAAATGAGCATAGAATCAGCCGAAGTTTTGGTCTTACCTTTTAGTGGAATTTCTGATCAGTTAGAAAACCTAGAAGACAGCGAAAATTTTCAACAAGTATTAGAGGAAGTCGTCGACGATACAGTAACAGAAATAGTCTCAACAAGCGATGATGCGAGCATTTCGGAGACCTTCCACCACGACCACAACTATGGGGACATGAACAAGTCACTCGATGGTAAATCAGCAGTCAGTATATCATACATTGTAGATCAGATCGAATCGAACAGGAATATTTGTTCGCTCTGTGATAAAAGTTTCAATACGCCGGCAAGTTTGAAGCGTCATTTAAGGATCCACACGGGAGAGAGGCCTTTCCAGTGCCAGATTTGCGAAAAATATTTCTCCCAGCAGAGCAATTTATGGAAACACGTCCGCACTCATACAGGAGAGCGACCTTTCGAGTGTCCCCACTGCAAGAAACGTTTTTCCCAACGAGCAAACATGaagaaacatttaataattcataCGGGAGAACGTCCTTACGTTTGCTTCTTATGTACGAGGGGATTCACACAACAAGCCAATCTTACTAAACATATGCGGCTACATACAGGTGAAAAACCTTTCGGTTGCAACTACTGCGACAAACGCTTCACCCAACGTTCAAATCTTCAAAAGCACGAGCACCTTCACGAAGGAATCAAACCTTACACCTGCGAGATCTGCTTCCAGGCATTTACACAACAAAGTAATTTACGTAAACACGAAATGATGCATAAcaacattaaaaaatatgtttgtgaTTTGTGCAACAAAGGCTACGTGCAGAAAGTGAGCCTTTTAAAGCATAAACAGCGCTGCACTGGCGAACCGAAGACCGTAGACGCTGCAGAAGAACAGTTACTCTCACAATACGATGCCATTGAAGCACAGTGCCTTGAAGAAGACGACGACGACGAGGAGGGTGCCATCATTCTACAGGCGAAtggaaatgagtttatttttaCTACTGCCTAA
- Protein Sequence
- MSEEIIVSSDMYEETCESDSEQMCTYFPFIKIENDGSILIDGQPSSQDASQMSIESAEVLVLPFSGISDQLENLEDSENFQQVLEEVVDDTVTEIVSTSDDASISETFHHDHNYGDMNKSLDGKSAVSISYIVDQIESNRNICSLCDKSFNTPASLKRHLRIHTGERPFQCQICEKYFSQQSNLWKHVRTHTGERPFECPHCKKRFSQRANMKKHLIIHTGERPYVCFLCTRGFTQQANLTKHMRLHTGEKPFGCNYCDKRFTQRSNLQKHEHLHEGIKPYTCEICFQAFTQQSNLRKHEMMHNNIKKYVCDLCNKGYVQKVSLLKHKQRCTGEPKTVDAAEEQLLSQYDAIEAQCLEEDDDDEEGAIILQANGNEFIFTTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470210;
- 90% Identity
- iTF_00470210;
- 80% Identity
- iTF_00470210;