Dqua053808.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022333.1:49538449-49539573[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.3 9.3e+02 2.0 1.0 25 43 125 143 114 147 0.88 2 9 0.015 46 6.2 0.1 21 43 149 171 144 176 0.88 3 9 0.0001 0.32 13.1 0.1 21 48 177 204 173 209 0.87 4 9 0.0028 8.5 8.5 0.2 21 52 205 236 201 238 0.88 5 9 0.004 12 8.0 0.1 21 50 233 262 231 264 0.85 6 9 0.015 45 6.2 0.2 21 44 261 284 259 288 0.89 7 9 0.044 1.3e+02 4.7 0.0 21 45 289 313 284 322 0.81 8 9 0.44 1.3e+03 1.5 0.0 21 45 317 341 309 348 0.80 9 9 0.11 3.2e+02 3.4 0.1 21 44 345 368 336 372 0.82
Sequence Information
- Coding Sequence
- ATGGATGATATTTGTGTGAAGAAAGAAATTAATGAAGAGTTTATAATTAAGCAAGAAAATGACTTTACGGTAGAAAATCTTTATGTAaaggaagaaattgaagaagttCTAATAAAGAACGATCCAGACGACTTTTGTGtcaatgaaattgaagattgtTTGAATGATGTTACTGTGGATGACACTAATAAAGCAGAAAAATCATACGAATGTTTAAAATGCAAAAAAACCTTTACAggtttaaatttattcatttctcaCAAATGCTTGCAATCTATTAAGAAATCTTATGCTTGTAATGTTTGTCAGAAGACattcttgaagaatatttatttaaaaaagcaTAAACGTGTTCACAAAATAAAGAAATCACACAAATGTACTATTTGTCAAAAGATATTCCAACGAAATTGTGATTTGAAACGACATAATCGTTGTCATACGGGTGAAAAACCTTATACTTGTACTGTTTGTCAGAAGAATTTTGCTGAAAGTGGAGCATTAAGAAGTCATGAACGAGttcacactggtgaaaaaccattcacatGTAGcttatgtcaaaaaaaattcgCTCAAAGTAGTGATTTAAAGAGACACAAACGTCTTCACAGTAGTGTGAGACCATACCCGTGTGATATATGCGAAAAAAGATTTGTTTGTAGCAACGATTTAAAAAGACATGTAGAAGTCCACAGTGGTGAAAAACCTTTCGTATGCAATGTTTGTCAGAAAACATTTGTACGAAATAACGATTTAAAAAGACATTTGCGTATTCACAGCGGCGAAAAACCTTTTGCGTGTAATATATGCGAGAAAACATTTCTAAGGAATTGCGATTTGAGGAGACACAAGCGCTATCACAACGGAGAAAAGCCCTATACGTGCAATGTTTGTCAAAAAACATTTGTGGAAAGTGGTGTGCTAAAAAGTCACGAACGTATACATACAGGCGAAAAACCATTCTCCTGTAATTTCTGTCCGAAAACATTCGTACGAAGTAGCGAATGGAAAAGACATGAACGTGTTCACAGCGGAGAAAAACCTTATGAGTgtattatttgtcaaaaaacattTATACAAAGGAGCGATTTAAATAAGCATAAAAGTATTCATAAAGATGTATGA
- Protein Sequence
- MDDICVKKEINEEFIIKQENDFTVENLYVKEEIEEVLIKNDPDDFCVNEIEDCLNDVTVDDTNKAEKSYECLKCKKTFTGLNLFISHKCLQSIKKSYACNVCQKTFLKNIYLKKHKRVHKIKKSHKCTICQKIFQRNCDLKRHNRCHTGEKPYTCTVCQKNFAESGALRSHERVHTGEKPFTCSLCQKKFAQSSDLKRHKRLHSSVRPYPCDICEKRFVCSNDLKRHVEVHSGEKPFVCNVCQKTFVRNNDLKRHLRIHSGEKPFACNICEKTFLRNCDLRRHKRYHNGEKPYTCNVCQKTFVESGVLKSHERIHTGEKPFSCNFCPKTFVRSSEWKRHERVHSGEKPYECIICQKTFIQRSDLNKHKSIHKDV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470191;
- 90% Identity
- iTF_00470191;
- 80% Identity
- iTF_00470191;