Dqua010916.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:66732306-66736859[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.8 5.5e+03 -0.5 0.0 20 43 189 212 185 217 0.80 2 7 0.0095 29 6.8 0.1 21 44 218 241 213 245 0.88 3 7 0.0024 7.4 8.7 0.3 21 46 246 271 241 278 0.85 4 7 0.078 2.4e+02 3.9 0.0 25 48 278 300 271 304 0.85 5 7 0.46 1.4e+03 1.4 0.1 22 44 303 325 301 329 0.84 6 7 0.0014 4.3 9.5 0.0 21 46 330 355 325 358 0.89 7 7 0.00047 1.5 11.0 0.1 21 46 358 383 355 390 0.89
Sequence Information
- Coding Sequence
- atgtcCCATTTTGCtgatatttgtttgatttgtttAAAACATTCAGACAATCTTGTATTTATTAAACGTCAAGATACAACTGGAACAAGTATTGAagaaaaactagaattatttctaCTTGAACTCACGCTCAATTCGAATATTCCGAAGTATATATGTGCCAAGTGTGAAGATAGTTTGAATAAAAGTTatgaatttaaacaaatatgtttgcaaaatataccAACATACGAAAAACgtgctcaacaagtaaccacaGCTGACAGTtcttataaatatgattttgtgTGCAAAGAAGAACAGATaactaatgaaaataattttgattcgaATATTGCAGCaacacaaattgaaattaatgtagGTGTTGccaaaaatgaagaaatttttattaagGAAGAGATAAATGACGAATTACTGCATTGTCAATCAAATGATGAACAAAATgaagttattattgaaaaaagtgcGCGAATATCAGCCGATTCTGTGTCACATTCGActgaaactgaaaataataGCAAACAAGAGTcaaatacattattttcaacAGAAAATGACAATAATAGCAAACAAgaatatatttgtgaaatttgtgacaaatcaTTCAGCAATTCGCAATATTTCAAAGAACATAAACTTgaacacactggtgaaaaaccattcacgTGTACAATTTGTGAAAAATCATTTCGACTACAGcaacaattaaaaaatcatCATTCAGTACATACTGGTGAAAGACCacatacttgtgaagtttgtaacaaaTCCTTTCGACTACGGTCGAGCTTAAGAAAGCATAAAATGCTACACACTAATAAAAAATCTTACACTTGTggagtttgcaacaaatcattcaacaaTTCGAGATATTTAAAGGAACAtgaacttatacacactggtgaaaaatcatttacttgtaaaatttgtgaaaGATCATTTCGATTATTGCAACAATTGAAAACTCACTATTCCGTACATACTGGTGAAAAGCCACATACTTGTGATGTTTGCAATAAAACATTTCGACTATCGACAACTTTAAACAAGCATAAACGTCTGCACACTGGCGAAAAACCAtacacttgtgaagtttgcaacgaaTCATTCAGACAACTAATCACCTTAAAGCGGCATAAAGATATACACATGAGTGAGAATCCTGATTTTCTGCTTAAAAAAGAAGATGAAGAACCAAGTGAAATGAATGTAGATACAGTGGACAGTAAAGATTTCGTTATTGACCAAGAAATTGATAAAGAATTAATATCAAATGATGAATTGGATTCATTATTGTATGAGATTAAAAAGAGAGAGCCTGAATTAGATGATAAATGTAACAATAATGAGAAATGA
- Protein Sequence
- MSHFADICLICLKHSDNLVFIKRQDTTGTSIEEKLELFLLELTLNSNIPKYICAKCEDSLNKSYEFKQICLQNIPTYEKRAQQVTTADSSYKYDFVCKEEQITNENNFDSNIAATQIEINVGVAKNEEIFIKEEINDELLHCQSNDEQNEVIIEKSARISADSVSHSTETENNSKQESNTLFSTENDNNSKQEYICEICDKSFSNSQYFKEHKLEHTGEKPFTCTICEKSFRLQQQLKNHHSVHTGERPHTCEVCNKSFRLRSSLRKHKMLHTNKKSYTCGVCNKSFNNSRYLKEHELIHTGEKSFTCKICERSFRLLQQLKTHYSVHTGEKPHTCDVCNKTFRLSTTLNKHKRLHTGEKPYTCEVCNESFRQLITLKRHKDIHMSENPDFLLKKEDEEPSEMNVDTVDSKDFVIDQEIDKELISNDELDSLLYEIKKREPELDDKCNNNEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470310;
- 90% Identity
- iTF_00470310;
- 80% Identity
- iTF_00470310;