Dqua009590.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:42610772-42611938[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.066 2e+02 4.1 0.1 21 44 102 125 92 132 0.84 2 10 0.002 6.3 8.9 0.1 22 44 131 153 128 161 0.85 3 10 0.063 1.9e+02 4.2 0.1 21 43 158 180 155 184 0.91 4 10 0.0006 1.8 10.6 0.2 21 43 186 208 180 214 0.89 5 10 0.58 1.8e+03 1.1 0.1 21 47 214 240 209 247 0.78 6 10 0.16 4.9e+02 2.9 0.0 22 46 243 267 237 275 0.83 7 10 0.012 37 6.5 0.1 15 43 264 292 261 297 0.87 8 10 0.025 76 5.5 0.1 15 44 292 321 287 325 0.85 9 10 0.0002 0.62 12.1 0.2 25 44 330 349 322 353 0.85 10 10 0.0074 23 7.1 0.1 22 46 355 379 352 385 0.86
Sequence Information
- Coding Sequence
- ATGGTACATCATCATTTTGTGTGTAAAGAAGAGATACCTAATGGAAATgatacaaatattgtagaatcaAAGAATGAAATAGAATTTGTAGATGTAGCTAACTATGaagcaattattattaaagaagaaaCAAACGAAGAGTTAGTATCAAATTACAAATTAGGATCATTACTATGTGAAATTAAAGAGGAATACTTAAAATCAGATGAAACATGTGAACAAAACAAAcatattcttgaaaaaaattcacaaatacCAGATAATTTTGTATCACCGTTAACTGGTAATGGGAATAGTAAAAAAGGTAAAAAACCATgtatttgtgaaatttgcaataaatcattcggACTGTCATCAACTTTGCAGCgacataaacttgtacacactgatAAAAAACCTTATACTTGTGATATTTGCAACGAATCATTCAGACAGGCATCAACTTTGCATCAACATAAACTTGTTCATACCGGTGAAAAACCTTAtaattgtgaagtttgcaacgaaTCATTCCGACGTTCGTATACTTTGAAGATGCATAAATTTCAACACAcgggtgaaaaaccatttacttgtgaggTTTGCAATCAATCGTTTAGGCAGACACACCATTTGAAACAACACCGCTTAACACACACTGGTGAGAGACCATTTCCTTGTGACATTTGCAACGAATCATTTAGTCGTGCAGATAGTTTAAAGTTGCATAAAATGCTGCACACTGATAAAAAACCATATGCTTGTGAAGTTTGCGATGAAACATTTGTACAGTTACGTTATTTAAAACAACATCGTTCAACGCACACGGATGAAAAACCATATGTCTGTAAAATTTGCAAACAATCATTCAAGCAGATAACCACTTTCAAAAAACATCGTTTAATGCACACAAAAGAAAAACCTTTTGTTTGTGTAATTTGCAGTCGATCATTCAAGCAGCTGCAGTATTTAAAAGAACACATTTCATCACACAATGATGATAAGCTgttcacttgtgaagtttgcagcaAGTCATTCCGACAATCGCGAAGTTTGAGGTATcataaacttctacacactgatgaaaaaacttttacttgtgaaatttgcaacaaatctcTCCGGCATCCGGACTCTTTGAAGCGGCATAAACTTCTACATGCTGGTGAAAGACCATATACTGAATGA
- Protein Sequence
- MVHHHFVCKEEIPNGNDTNIVESKNEIEFVDVANYEAIIIKEETNEELVSNYKLGSLLCEIKEEYLKSDETCEQNKHILEKNSQIPDNFVSPLTGNGNSKKGKKPCICEICNKSFGLSSTLQRHKLVHTDKKPYTCDICNESFRQASTLHQHKLVHTGEKPYNCEVCNESFRRSYTLKMHKFQHTGEKPFTCEVCNQSFRQTHHLKQHRLTHTGERPFPCDICNESFSRADSLKLHKMLHTDKKPYACEVCDETFVQLRYLKQHRSTHTDEKPYVCKICKQSFKQITTFKKHRLMHTKEKPFVCVICSRSFKQLQYLKEHISSHNDDKLFTCEVCSKSFRQSRSLRYHKLLHTDEKTFTCEICNKSLRHPDSLKRHKLLHAGERPYTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470190;
- 90% Identity
- iTF_00470190;
- 80% Identity
- iTF_00470190;