Dqua010910.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:66668313-66669599[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 2 6.1e+03 -0.6 0.1 27 43 98 114 94 125 0.81 2 12 0.00052 1.6 10.8 0.2 26 51 125 149 118 153 0.89 3 12 0.26 7.9e+02 2.2 0.0 23 49 150 175 148 179 0.86 4 12 0.0054 17 7.6 0.1 22 47 177 201 174 206 0.87 5 12 0.0061 19 7.4 0.0 26 45 209 228 203 231 0.91 6 12 1.3e-06 0.0041 19.1 0.1 19 47 230 257 228 260 0.86 7 12 3.9e-07 0.0012 20.8 0.2 21 45 260 284 257 291 0.87 8 12 0.0076 24 7.1 0.0 23 43 290 310 285 315 0.92 9 12 2 6.3e+03 -0.7 0.0 22 43 317 338 314 343 0.79 10 12 0.052 1.6e+02 4.4 0.1 21 43 344 366 337 371 0.86 11 12 0.00047 1.4 11.0 0.0 22 43 373 394 369 401 0.90 12 12 0.00035 1.1 11.4 0.1 22 48 401 426 395 428 0.88
Sequence Information
- Coding Sequence
- ATGTCTGACGAAAATAATTCAGAGTTAAAAACTGAAATGTGTGAAGGTGTAGCACACAGTaagcaatttattattaaagaagAACCAAACGAAGAATCAGAATCAAATGACGAATCAGAAGTGTCCCCGCGTGAGGTTAAACAAGAATTCCAATCTGATGAAAATAGTTGTGATATTCCAGAATCAAAAACTGAAGCAGTTTTTATTAAAGTGGAACCAAACGAAGATTGGGCATCAAATGACGAACAACAACAGAAacaaattaaagaagaaaattgCGAGTTGCATAAATGTGAAACGTGtgacaaatcatttaaatatgtACGAAGTTTGAAAAGGCACCAACTCAACCACACAACTATAAAAACATTCGcttgtaaaatttgtgaaaaagcATTCCGATTTTCGGAATCATTGAAGCGGCATGAACTTCGACACACTGGTAAAAAACCATTtgtttgtgaagtttgcaacgaaTCATTCCGTCATTGGAAAGATTTGAAGatgcataaacttatacacttTGGGGAAGGGCCGTATACgtgtgaaatatgcaataaATCGTTCAGTCAGCCGGATACTTTGCAGCGGCATGAACTTCTACACACTGATGTTAAACAATTTACCTGTGAAATTTGTAACGaatcattcagtcaatcaagtGATTTAAAGCAACACCTTTCAACCCACTCGAGTGAAAAACCTTTCACTTGTGAGATTTGCAACAAATCGTTTATGAGGTCGCGGAATTTGAGGATGCATGAACTTCTACACACTaacgaaaaaccatttacttgtgaagtttgcaacgaaTCGTTTAGACAATCACGGTATTTAAAACGACACCTTATTACACACACTGGAGTGAAACCATTCACCTGTGAAGTTTGCAGCCAGTCATTTAAAGATTCGCACTCTTTGAAGCGGCATAAATTTGTGCACACTGGTGAAAAAGCTTTCACTTGTGAAGTCTGCAATAAATCGTTCAGACTTTTACCAACTTTAAAgcagcataaacttatacacagtggtgaaaaaccatacacttgtgaagtttgcaacgaaTCGTTCAGACATCAGCAGTCTTGGAAGaaacataaacttgtacacactgatGATAAACcgtttacttgtgaagtttgttaTCAATCATTTAAACAGTTGAGCGATTTGGAACGGCACCGGATTACGCACACTGGGAAAAAACCTTTTACCTGTGACGTTTGCAATACTTCTTTCACCACGAAACGCAGCTTGCAGCGACATCTGAAAATGCACTTCaactaa
- Protein Sequence
- MSDENNSELKTEMCEGVAHSKQFIIKEEPNEESESNDESEVSPREVKQEFQSDENSCDIPESKTEAVFIKVEPNEDWASNDEQQQKQIKEENCELHKCETCDKSFKYVRSLKRHQLNHTTIKTFACKICEKAFRFSESLKRHELRHTGKKPFVCEVCNESFRHWKDLKMHKLIHFGEGPYTCEICNKSFSQPDTLQRHELLHTDVKQFTCEICNESFSQSSDLKQHLSTHSSEKPFTCEICNKSFMRSRNLRMHELLHTNEKPFTCEVCNESFRQSRYLKRHLITHTGVKPFTCEVCSQSFKDSHSLKRHKFVHTGEKAFTCEVCNKSFRLLPTLKQHKLIHSGEKPYTCEVCNESFRHQQSWKKHKLVHTDDKPFTCEVCYQSFKQLSDLERHRITHTGKKPFTCDVCNTSFTTKRSLQRHLKMHFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470150;
- 90% Identity
- iTF_00470150;
- 80% Identity
- iTF_00470150;