Dqua009431.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:41282812-41285125[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.5e-05 0.0064 18.8 3.8 2 23 124 145 123 145 0.96 2 17 8.5e-05 0.016 17.6 0.1 1 23 151 173 151 173 0.97 3 17 0.5 92 5.7 0.1 1 13 206 218 206 219 0.90 4 17 1.5e-05 0.0028 19.9 2.3 1 23 231 253 231 253 0.97 5 17 8e-07 0.00015 23.9 2.6 1 23 259 281 259 281 0.96 6 17 0.0013 0.23 13.9 1.7 1 23 287 309 287 309 0.97 7 17 5.8e-06 0.0011 21.2 1.5 1 23 315 337 315 337 0.97 8 17 0.00018 0.033 16.5 0.2 1 23 343 365 343 365 0.96 9 17 0.00011 0.021 17.2 1.1 1 23 371 393 371 393 0.97 10 17 0.0012 0.22 14.0 7.1 1 23 399 421 399 421 0.97 11 17 0.00063 0.11 14.8 0.2 1 23 427 449 427 449 0.97 12 17 2.4e-05 0.0044 19.3 1.1 1 23 455 477 455 477 0.98 13 17 8.7e-06 0.0016 20.7 2.2 1 23 483 505 483 505 0.93 14 17 1.9e-05 0.0034 19.6 0.4 1 23 511 533 511 533 0.96 15 17 0.00032 0.059 15.7 1.6 1 23 539 561 539 561 0.97 16 17 0.0062 1.1 11.7 1.2 3 23 569 589 567 589 0.96 17 17 0.00011 0.021 17.2 1.6 1 23 595 617 595 617 0.97
Sequence Information
- Coding Sequence
- ATGTTAGAAAAAGGAATACAAGATTTGAAATATGTAGATACTTCAGAGAATTTTCATGCAgggaaagaaattgaaaaagttaTGATAGAAGAAAAGTTGTACAAAGTCATGCATGAGATAGAATATGTGGATACGGTAGTtgtgaaaaaagaaattaatgagAAATTTATTGTGagagaaaaattcaatatccaAGAAAATGATCCGCAAGGAAACTGTtcaaaaataaaggataaatTTCAGCAAGAACATTCTCACAACATAATTGATAGAAAACAAGATGAAAATGTTACtggaaaaaatattgcaaaagaGACAGaCTCTCTAGCAACATCTGATACTATTATCGACACCGAAGAAATATCATGTGAATGTCCTATTTGTCATAAATCATTTAACGATTTGAAGTCTTTAAATTCTCACAATCGAATCCACAACGGTGAGAAACCATATGCGTGTGATGTATGTCAGAAATCGTTCGTACTAAAAGGTGCTTTAAAAGCACACAAATTAATCCATAACAGTGAAAAACTACATAAGTGTAATGTATGTCAGAAATTTAAATGGAGTAGTAATTTAGAGcgacacaaatttattcacagCGATGGAAAACCATATGAATGTGATGTTTGTCAAATCTCATTTGTTTCCAGAGAAAGACACAAACTTATACAAAGCGGCGAAAAACCGTACATTTGCAATGTCTGTGATAAAAAATTCGTTACTTGTACTGAACTAAATAGACACAAACTTATCCATAGCGGTGAGAAACCACACGTTTGTAGTGTCTGTCAAAAAACATTCTCACAGAGCGGTAATTTAAAGAGACATCAATATATCCACAGCAACAAGAAACCATATTCTTGTGATATCtgtgaaaaatcatttgaatggAGTTGTGATTTAAAAAGGCATAAACTTGTTCATAGTAGTGAAAAACTACACACTTGTGATATCTGTCAGAAAACATTCGCAGATAGTGATAAATTGAAGAAACACGAACTTATTCATAGCAACAAGAAATCATACGCTTGTGCCGTATGTCAGAAAGAGTTCGCTCAAATTAGTGATTTGAATAAACACAAGACTGTTCATATCCGTTTGAAATCTTATTCGTGTGATATTTGCCAGAAATCATTTGAATGGAGTCGTAATTTGAAGAGACACAAACTTATTCACAGCGGTGAAAAATCACACACTTGTAATATCTGTCATAAATCATACGCAGAAAGTTGTAATTTGAAAAAGCACAAACTTATCCATAGCGACAAGAAACCATACGCTTGTAACGTTTGTCAAAGAGATTTCGCTCAAATGATTGATTTAAATAGACACAAACTTATTCACAGCGGTATGAAACCGTATTCTTGTGATATCTGTAAGAAATCTTTTGAATGGAGCAGTAATTTAAAGAGGCACAAACTTATCCACAGCGGCGAAAAGCCATACGCTTGTAATATCTGTCATAAATCATTTGCAGAAAGCAGTAATTTGAAGAAACACAACTTTATCCATAGCAACAAGAAACCATTTGCCTGTAACATTTGTCAAAAAGATTTCGTTCAAATGAGTGATTTAAATAGACATAAACTTGTTCATAACGGTGCAAGACCGTATTCGTGTGATATCTGTAAGAAGACATTCTTACgcaaagaatatttgaaagagCACAAATTAATTCACAGCGGTGGAAAGCCATTTGGCTGCGATATTTGtcagaaaacatttttatacaaTAAGGATTTACAGagacacaaatttattcatagcGGGAAGAGACCATATGTATGTAATGTCTGTCAAAAATCATTTGCAGAAAGTTGTAAATTAGAAAGACATAAAATTATTCACAGCGATGTTAaaccatatactcttgtattatTTGTCAGAAAAAATTCACTCAGAAAAGTAATTTGA
- Protein Sequence
- MLEKGIQDLKYVDTSENFHAGKEIEKVMIEEKLYKVMHEIEYVDTVVVKKEINEKFIVREKFNIQENDPQGNCSKIKDKFQQEHSHNIIDRKQDENVTGKNIAKETDSLATSDTIIDTEEISCECPICHKSFNDLKSLNSHNRIHNGEKPYACDVCQKSFVLKGALKAHKLIHNSEKLHKCNVCQKFKWSSNLERHKFIHSDGKPYECDVCQISFVSRERHKLIQSGEKPYICNVCDKKFVTCTELNRHKLIHSGEKPHVCSVCQKTFSQSGNLKRHQYIHSNKKPYSCDICEKSFEWSCDLKRHKLVHSSEKLHTCDICQKTFADSDKLKKHELIHSNKKSYACAVCQKEFAQISDLNKHKTVHIRLKSYSCDICQKSFEWSRNLKRHKLIHSGEKSHTCNICHKSYAESCNLKKHKLIHSDKKPYACNVCQRDFAQMIDLNRHKLIHSGMKPYSCDICKKSFEWSSNLKRHKLIHSGEKPYACNICHKSFAESSNLKKHNFIHSNKKPFACNICQKDFVQMSDLNRHKLVHNGARPYSCDICKKTFLRKEYLKEHKLIHSGGKPFGCDICQKTFLYNKDLQRHKFIHSGKRPYVCNVCQKSFAESCKLERHKIIHSDVKPYTLVLFVRKNSLRKVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470523;
- 90% Identity
- iTF_00470523;
- 80% Identity
- iTF_00470523;