Dqua009565.2
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022325.1:42236821-42245131[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 3.4e-07 6.1e-05 25.1 1.8 1 23 194 216 194 216 0.97 2 18 1.2e-05 0.0022 20.2 2.0 1 23 222 244 222 244 0.96 3 18 1.1e-06 0.00019 23.6 1.1 1 23 250 272 250 272 0.98 4 18 1.2e-05 0.0022 20.2 0.4 1 23 278 300 278 300 0.98 5 18 4e-05 0.0073 18.6 0.7 1 23 306 328 306 328 0.97 6 18 5.7e-07 0.0001 24.4 1.3 1 23 334 356 334 356 0.99 7 18 6.3e-07 0.00011 24.3 0.4 1 23 362 384 362 384 0.98 8 18 1.5e-06 0.00028 23.1 2.4 1 23 390 412 390 412 0.98 9 18 4.8e-05 0.0088 18.3 0.3 1 23 418 440 418 440 0.98 10 18 0.00021 0.039 16.3 1.5 1 23 446 468 446 468 0.97 11 18 5.1e-06 0.00093 21.4 1.8 1 23 474 496 474 496 0.97 12 18 8.2e-07 0.00015 23.9 2.3 1 23 502 524 502 524 0.98 13 18 1.3e-06 0.00024 23.2 1.4 1 23 532 554 532 554 0.97 14 18 5.5e-07 0.0001 24.4 0.6 1 23 560 582 560 582 0.98 15 18 2.6e-06 0.00048 22.3 0.9 1 23 588 610 588 610 0.98 16 18 2e-05 0.0036 19.6 1.1 1 23 616 638 616 638 0.95 17 18 3.1e-06 0.00056 22.1 2.2 1 23 644 666 644 666 0.98 18 18 2.4e-05 0.0044 19.3 0.5 1 20 672 691 672 693 0.95
Sequence Information
- Coding Sequence
- ATGGATGGTATTGATGTAAAAGAAAAAGACAATGGAGAATGTACAATTAAGGAAGATTTTAATAACTTTGAAAAAAACATGCTAGGAGATAATCGTGCAGTGGATGTTTTTTATGCCAAAAAAGATTTTGAGCAGGTATTAATTAAGGAAGAATATATTAGTGATGATGGAGAGCAAGTTGTAGAATGTAATACTGAGAAGACCAATTTATATGTCAAGAAAGAGAGAAATTATGATTTAATAATAGAGAAAGAACTAAATATTTACAGAAATGGCATGCAAGATGTAGGAAATAAAAATGCTATTAACAGTGTTTTCATCAAGGAAGAATTAAATGAAGAATCCATAATACAGGAAGATGCAAATCGATTTGAAAAAGATATGCATGTTGCTCCAAATGAAGATACGACAGATGATTTTTGTTTAAAAGagaaaattaatgaagaatTGATCATTAAAGAAAACTCAACTTCCCAAGAGAATAACATGGAGCAAGATGAATCTGATTCTGAAAATGATACAACTGATACAGaCTGTCAACCAACATCTGCCTGTATCAATTACAAAGAAAAGCGTCCATTTGAATGTCCTACATGTCAAAAAACATTCGATCGTAAAAGTAGTTTGAAGAAACACATATTTATTCACACTGGTGAGAGACCACATGCATGCGATATATGTCAAAAAACATTCACAGAAAGTGGCACTTTGACTAAACACAAACGTATTCACACTAACGAAAAGCCATACGCATGCAATTTCTGTGAAAAAACATTTACTGATAATAGTACTTTAATACAACACAGACGTATTCACACCAACGAGAGGCCATATTCTTGTAATGTttgtgaagaaaaatttaaacaaattggGGCTTTAAACAGACATAGACGTATTCACAGTGGTAACAGACCGTACGCATGTAACATCTGTCTGAAAACTTTTGAACGAAATAGTGATGTAAAAAGACACAAACTTATTCACAGCGGCGAGAAACCATACCAGTGCGAAATCTGTCAGAAAAGATTCACAGAGAACGGTTCTTTGAATAAACATAGACGAATTCATAACAATGATAAACCATACGCTTGTAATATATGTCAGAGAACGTTCATACAGAGTGGAACTTTAAACAGACATATTCTTACTCACACCCAGGAAAGACCATATTCTTGCGAGTTCTGTCAAAAGACATTCGTACAAAGCGGACATTTAAAGAAACACATACTTATTCACAACGGTGAAAGACCATATGAATGTAATAGTTGTCAAGAAACTTTCGCAACAAATGATGCTTTAAAAATGCACAGACTTATCCATAACGAAGAGAAATTttataaatgtgatatttgtgAGAAAACATTCgcagaaatgaaatatttaaataaacataaatttattcacAGTGATAATAAACCATTTGCGTgtgatatttgtcaaaaaacattCGTTCGGAGTACTGATTTGAACAAACATAAAAAGTATCACAGCGAAGAGAAACCATACGTTTGTGATATCTGTCAGAAAACATTCGTACAAAGTTGTGATTTAAAAAGACATCAAATTACTCacaatgaagaaaaattatactTGTATGCTTGTAGTATTTGTCAGAAAACTTTCGAACGAAGTAGTGATTTAAAAAGACATGAATTTACGCATAGCGGTGAAAAACCATACTCTTGTGAAATTTGTCAGAAGAGATTTACAGAGAGTGGTTctttaaaaaatcatatacgtATTCATACTAAAGAAAAACCATATTCCTGTAATATCTGTCAGAAAAGATTCATACAGAGTGGTAGTTTAAATAGGCATAAACTTATTCATATCCGTAAAAAACCACATACATGTAATGTGTGTCAGAAAGTATTTGCacaaattgataatttaaaGAAACACGAACTTCTCCATATCGGTGGAAAACCGTACGAATGTAATATTTGTCAAAAGAAATTCAAAGAGAATGGTACTCTAAAAAAACACAAACGTATTCACACCAACGAGAGACCTTATGCCTGTGATGTCTGCAAGAAAACGTTCGTTCAGAGTGGCACTTTAAACAGACACATCACGCATTGTCGTGAGAagatatga
- Protein Sequence
- MDGIDVKEKDNGECTIKEDFNNFEKNMLGDNRAVDVFYAKKDFEQVLIKEEYISDDGEQVVECNTEKTNLYVKKERNYDLIIEKELNIYRNGMQDVGNKNAINSVFIKEELNEESIIQEDANRFEKDMHVAPNEDTTDDFCLKEKINEELIIKENSTSQENNMEQDESDSENDTTDTDCQPTSACINYKEKRPFECPTCQKTFDRKSSLKKHIFIHTGERPHACDICQKTFTESGTLTKHKRIHTNEKPYACNFCEKTFTDNSTLIQHRRIHTNERPYSCNVCEEKFKQIGALNRHRRIHSGNRPYACNICLKTFERNSDVKRHKLIHSGEKPYQCEICQKRFTENGSLNKHRRIHNNDKPYACNICQRTFIQSGTLNRHILTHTQERPYSCEFCQKTFVQSGHLKKHILIHNGERPYECNSCQETFATNDALKMHRLIHNEEKFYKCDICEKTFAEMKYLNKHKFIHSDNKPFACDICQKTFVRSTDLNKHKKYHSEEKPYVCDICQKTFVQSCDLKRHQITHNEEKLYLYACSICQKTFERSSDLKRHEFTHSGEKPYSCEICQKRFTESGSLKNHIRIHTKEKPYSCNICQKRFIQSGSLNRHKLIHIRKKPHTCNVCQKVFAQIDNLKKHELLHIGGKPYECNICQKKFKENGTLKKHKRIHTNERPYACDVCKKTFVQSGTLNRHITHCREKI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00470525;
- 90% Identity
- iTF_00470525;
- 80% Identity
- iTF_00470525;