Dqua057543.1
Basic Information
- Insect
- Dromius quadrimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963989225.1
- Location
- OZ022334.1:38812315-38817934[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.79 8e+03 -1.5 0.0 57 72 105 119 97 121 0.78 2 2 1.6e-15 1.6e-11 45.5 0.0 8 70 184 247 179 252 0.87
Sequence Information
- Coding Sequence
- ATGAGTACGAGTGAAGGTGAAAAGACTAGTGAATCGGAAGATGCAGCTACTAAAATTACTAAAAATGAGAAGGAATCTTCGTCAAGCCTCAATGGTGTTGACGAAGCGTCATGCGAAAATACTAAAGTGCTAGATGATTCGGAAGAGATTAAAATGACTGAAAACGAACAGGAAAGTGATCCGCCGCCTGTTAAAAAGCGTAAATTGAATGATTCTGGTGAATTATCGGACGATTCGTCGTCCACGGAGTTTTTAGGTTTTCCAGACACGCGTACGGAAGAAGAGAAAAATGCGGCCGCTGTAAAGAAAGAAAAGCAAGAAagagtcaaaatggatttatttTCGTTTGATACAGAAACTTTTGGCAAAGGAAAACGATCAAGGGTtcctaataaaaaatatgaaggtTTGGCAGATAAAGTTAAGTTATCTAAAAGTTCGAGTAGACACAGCGATTTAGAAGAGAATGACGAAGATATTTTAAGTTCTCCTCGTACTAAAACACACACAAATAAAAAACAGAAAGTGGATATGTCAAATCCGAATTATTTGAAGCCTTTTGAGCTCGGCTGGAAGCGGGAACTCGTTTATAGAGCCACAGTTGATGCCTCAATGCGAAGAAACGGCGATACTTATTATTATTCCCCTACAGGGAAGAAAATACGCTCAATGCGCGAATTAATCGATTTATTAAAAGCAGATAAAGGTACTGAATTAACTGCTGAGGACTTTACTTTCTTTAAAGAACCTGTAGGGGTTAATGATCccgaaaaagaaataattagagaGGCAAAATATAAAAGTGCAGCCAAAAAATCTAGAATTTCCAGCCCTAGAGTCGCTGCGTCAGAACTTAAAAGCACCAAATCGCCCAGATTAGGAGGATTCAAGGTTAAAATGCCAGGCACATCAAAATTAAACCAATCCTCAACTAAAAAAGAAACGAAAAGAGCCTCAAACGATTCCGAAATGGAAATAGGGATGTTACCGCCCGCTTGGTCGCCCAAAAAAACCACCACCAAATCAGCCTACAATTCTCCAGTGGATGCGAAACCGTGCCGGCCATGCTCCATCCGCTGCATAGGCGTTTCTGGTTTGATTCCGACGCTGCAGTGCCGGCTTTGTCTCTGCCTCTATCACAAAGAGTGCGTTGGGGAGCTTAGCGACGATGTTCCAGGAGGCTATGTGTGTAAGAATTGCCAACTGGACAACCaagacaaaattgaatcaacaTTTGACCTACCTGTGATAGGTCCGCCGCCTTTAACCCCAATTAGCtcattaaaatcaaataatatccAATCCCCCACCCCTCCAAAATTACAGCGCATCCCTCGTCCTGAAAACGCCCCAAAAccaaaaaatgagaataaaagtaTTTTGGGGAGTGTTACAACTTGGTTTCCGCCGAATTCGactttaaaaatgaataattcaattagtAAACCAGATGAGTTGACTACTAAGCCGCAAAATGTTGTTTTTATGGGGGAACGAAAATTTTTGGTTGTTCCTAAGGGGAATGTTTTGAGTATTTCGCCCACAATTGGCACTACTATCACTACtcctaataataaaattgttaccTCACCTACAGCCGATAAAGCCCCTGAAATTAGTAATAAAAGTCCTACTCCTTCTATTATTCCCGAAAACACCCTTTTTACAGCTCCATCAGTAACAGAGAGGCCCGTTGTGATGGACGAGCCAAGCAGCACAACCGGAGAAACAAAACAgAGTCAAGTAGAGGTGACAACGCCTAAAACAAGGCGCAGTGCATCAAAAAAGGCTCCAATTGCGCCAGCACCGGTGGTAAAAAACGATTCAGAGTCACGTTTCatgcaaaattatttgcaaaatcttTCGTACGGTTATCAAACTTTGTTATATgtctttcaatatttgaaagtgCAGGATTTATTGCGTGCGGGGTGCGTTTGTACTTTGTGGCGGGACACGGCGGGCCATCCCAGTTTATGGAACACGGTTAGAATGAAAAATTCACAAGTTGCTAATTGGGAAGGGTTGGCGGACGCCCTTAAAAAGCACCGGACAAAAAATTTGGACCTCCGTAAGATGCTTCTCCCCAATACAGGGGACGATATGTGGGCCCAATTTTCTAGAGCCATTGCGAGGGTTGATTCTTTGGTTAGAATAGAGTTATGCCGATGTCCGGCGTCGGTTATTGAACAATTGGCGACtactaataaaaatttggagGTTATAAATGCTGTGATGATTAGATGCGAAAGCATGGATGTTAGCGCGTTGGATAATCTGGAGAATTTACAGGAATTGCGCCTGAAATCAACTAATGGTTTCACTTTAACGTCAGATTTGACCGCcctgaaaaaattgacaaaattgaaGCATCTTTCTTTGACTTCTGTTAAAGATTTGCATAGATTAAACGTGCAAGTAATTGGGGATTTAATTAATTTGGAGAGTTTAGATTTGGGGGAGTGTAGTGACTTTCCGGATAATTTTGGTACAGAcgtaataatgaaattaataaaactgGAAAAATTACGGTTGGAAAAGGGGCAAGGCAGTTGCGGCACTTTTAATATACTAGAAGCAGTCAGTAAAATTTCGTGCTTAGAACAACTAGAATTAGTGAATTTCGATGTTAAAGCAGGCTTTGATAAAGCCTTGGGCGCGTGCGccaacataaaaaaattattaataatcccTACATACATATCCCAATCGGCAACAACTAATCACATGGTTTTAGGGGGTGTAATAAATCTGAAAACAACTTTATCGCATTTTGTTTGGGGCGTGACGTTAGAATTACTACGCGTGACGGAACTTTTCGTCGATCAGTGCGAAGATGCGCCGAGTAAAGACAAAAAAAAGCCAACCGGAAATGGGGATAGTATCCCGGTATTAAAACCCGTCCCAATAATGAAAACAGATGATACGTCAGATGATTCAAGTAATAAAGAACAACCACAAGTTGAAATATTACCGCTACCAACTttacagaaattattattaaactgTCTGCCTACAACGCGAgtaaaaatactgaaaattccATTCCACGCGACGTGGCGGCAAAGTATAATTGACACAGTGAATTAA
- Protein Sequence
- MSTSEGEKTSESEDAATKITKNEKESSSSLNGVDEASCENTKVLDDSEEIKMTENEQESDPPPVKKRKLNDSGELSDDSSSTEFLGFPDTRTEEEKNAAAVKKEKQERVKMDLFSFDTETFGKGKRSRVPNKKYEGLADKVKLSKSSSRHSDLEENDEDILSSPRTKTHTNKKQKVDMSNPNYLKPFELGWKRELVYRATVDASMRRNGDTYYYSPTGKKIRSMRELIDLLKADKGTELTAEDFTFFKEPVGVNDPEKEIIREAKYKSAAKKSRISSPRVAASELKSTKSPRLGGFKVKMPGTSKLNQSSTKKETKRASNDSEMEIGMLPPAWSPKKTTTKSAYNSPVDAKPCRPCSIRCIGVSGLIPTLQCRLCLCLYHKECVGELSDDVPGGYVCKNCQLDNQDKIESTFDLPVIGPPPLTPISSLKSNNIQSPTPPKLQRIPRPENAPKPKNENKSILGSVTTWFPPNSTLKMNNSISKPDELTTKPQNVVFMGERKFLVVPKGNVLSISPTIGTTITTPNNKIVTSPTADKAPEISNKSPTPSIIPENTLFTAPSVTERPVVMDEPSSTTGETKQSQVEVTTPKTRRSASKKAPIAPAPVVKNDSESRFMQNYLQNLSYGYQTLLYVFQYLKVQDLLRAGCVCTLWRDTAGHPSLWNTVRMKNSQVANWEGLADALKKHRTKNLDLRKMLLPNTGDDMWAQFSRAIARVDSLVRIELCRCPASVIEQLATTNKNLEVINAVMIRCESMDVSALDNLENLQELRLKSTNGFTLTSDLTALKKLTKLKHLSLTSVKDLHRLNVQVIGDLINLESLDLGECSDFPDNFGTDVIMKLIKLEKLRLEKGQGSCGTFNILEAVSKISCLEQLELVNFDVKAGFDKALGACANIKKLLIIPTYISQSATTNHMVLGGVINLKTTLSHFVWGVTLELLRVTELFVDQCEDAPSKDKKKPTGNGDSIPVLKPVPIMKTDDTSDDSSNKEQPQVEILPLPTLQKLLLNCLPTTRVKILKIPFHATWRQSIIDTVN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -