Dfal012779.1
Basic Information
- Insect
- Drepana falcataria
- Gene Symbol
- Rfx2
- Assembly
- GCA_945859695.1
- Location
- CAMAOO010000052.1:1511603-1527227[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-37 1.9e-33 115.0 0.0 3 78 198 273 196 274 0.97 2 3 0.52 5.1e+03 -1.7 0.0 32 60 377 405 375 409 0.82 3 3 1.3 1.2e+04 -2.9 0.0 24 33 724 733 709 740 0.69
Sequence Information
- Coding Sequence
- ATGTCTGAGATGGGGTTCGAGAATGTGTTTTATTTGGAAAATTTTGAGTGCGCTGGCGACGAGGTGCTCGTGGAGTCGTCACCACCCGCCTCGCCCGACATGGCGGCGCGACTTGCCGCGCCCGCGCAGAGTACGGGCGCGGGCGGCGCGTCGCCGAGCGCTGTGCGCGAACTGATCGTCATCCCGGAGATACCAAACACGATACAACTGCAGCACGCTATACAACAGGTGTCGAGCACTGTCGTCGAGGGAAATGGAGACAGTTCGGGTCACTCGAGTCCCACCACTGAGGCGCAACATACATACATCGCCGTAGCCAGTGAGGGCAGCAATGGAGTCAACTACCACGTTCAATATGTCACCGAGCCTCAGGAGATATACACGCAAGGGCAGCAGATGGATGCCCTGCGCTCGTTCCCAGTGTACGGGGTAGCCACGGTAGGCGACGCGGGCGGCGGCGAGGGCGCGGCGGGCGACGGCTGGGGCAGCGCCTCCTCCGCGGAGTACACCGCCTATGGAGTCGTGGTGGCCGGCGACGATGCGGACGCGGCGTCCTCGCCCTCCGAGCCGCAGCCGCCGCGCATGCCGCCCGCCACGGTGCAGTGGCTGCTCGACCACTACGAGACCGCTGAGGGCGTGTCCCTCCCCCGCTCGACGCTGTACGCGCACTACCTGCGCCACTGCTCGGCCCACCGCCTGGAGCCGGTGAACGCGGCGTCGTTCGGCAAGCTCATCCGCTCCGTGTTCCTGGGCCTGCGCACGCGCCGCCTCGGCACGCGCGGCAACTCCAAGTACCACTACTACGGCATCCGCGCCAAGCCCTCCGCCGACGCTCCCGACGCTCACGACGCGCCCGCCGCGCACCTCGACTTCCCCGACTCGTTCGATGACAAGAGTGATGCGGCCGACTCCCAGCCTTTTCACTTGCGCGCTGCCACTATGGTCGGAGAGTTATACTGTGTTGACAGCATCCTAGGACTAAGCCCTCTGCTGCCAACACAATATAACAATCCTCCCCCCTCCAAAGAGCTCATTACTGGAGACCTTAGTAACCGCGTAGAAACACAACACAATAAATTGTGTTATTTGGCTACGGACTTCTATAAGGTGGAGGTCCTGCCCCAGTCGGGCTGCTCTAAATTCGATTTAATATCAGTTAATTCGGCTTCGGCGAAAATAGTTGTCATTGTATTATTTACCGAAAGGGGTACGCGTCTGGGTCTAATTGAGCGGGTGGTGTCGCAGGAGGAGCAGGCCGGCTCGGGCTCGGGTTCAGGCTCGGGCTCCGGCTCGGGCGAGCATGCGCCAGGAGCCGGCCCCGAGGCGGCGCACCGCCAGTACCTGGGCCCCGTGGTGGCGCCCGAGCCGCCCGACCTCGTGCTGCCCGACGCGCCCGATGACGTCACCGATGACGCGCTGCAAGCGCTGCGCAGGCACCACCGCGAGCACGGCGCGGAGTTCCTGGAGGCGGTGGCGGCGCTGGACACGGGCGGCGTGGAGCGCGCGCGGCGCGGCTTCTGGCGGCGCGGCGGCGCGGCGCGGCTGTGCGCGCGGCCCGCCGTGGCGGCGTGGCTGCGCGCCGCCGACCTGCAGCTGTTCCAGCGCGCCGCCGACCTGCTGCTGCCCGAGGTGCTGCGGCCCATCCCGCCGCAGCTGACGCAGGCCATCCGCAACTTCGCCAAGAGCCTGCAGGGCGCGCTGTGCGGCGGAGGCGCGCCCGCGGCGGCGGCGCGCGCGCAGGCCTCGGCCGCCGCCGCGCTGGCCGCCGCGCTGCGCCGCTACACCTCGCTCAACCACCTGGCGCAGGCCGCGCGCGCCGTGCTCACCAACCACCACCAGATACACCAGATGCTGACCGACCTGAACCGCGTGGACTTCCGCGTGGTGCGGCAGCAGGCCACGTGGGCGTGCTCGTGCGGCAGCGCCGCCACGGCGCACCGGCTAGAGGCCGACTTCAAGGCCACGCTGGGCCGCGGCGCCAGCCTGGAGCAGTGGGCGGCCTGGCTCGCGGACTGCGTGCGCCGCGCGCTGGCGCCCCACGAGCGCCGCGCCCGCTACACGGCGCGCGCGCGCCGCCTGCTGCTCGACTGGTCCTTCTACTCCTCGCTCGTCATCCGCGAGCTCACGCTCAGGTCGGCGGCGTCTTTCGGCTCGTTCCACCTGATCCGGCTGCTGTACGACGAGTACGTGTCGTACCTCATCGAGCGCCGCGTGGCCGCGCACACGCACACGCCGCCCATCGCCGTCATGCACCGCATGGATGACGACGGGGAAGACGGCGAGGATAGTTCGTGCGATGTGAAGGACGAGGATGATCAGAAGCTGGACTGGGACTGGGACGACGACGACGAGGAGGAAGACGAACCAATAGAGAACAAGAAGCTTAAGCTCAGCGAGTAA
- Protein Sequence
- MSEMGFENVFYLENFECAGDEVLVESSPPASPDMAARLAAPAQSTGAGGASPSAVRELIVIPEIPNTIQLQHAIQQVSSTVVEGNGDSSGHSSPTTEAQHTYIAVASEGSNGVNYHVQYVTEPQEIYTQGQQMDALRSFPVYGVATVGDAGGGEGAAGDGWGSASSAEYTAYGVVVAGDDADAASSPSEPQPPRMPPATVQWLLDHYETAEGVSLPRSTLYAHYLRHCSAHRLEPVNAASFGKLIRSVFLGLRTRRLGTRGNSKYHYYGIRAKPSADAPDAHDAPAAHLDFPDSFDDKSDAADSQPFHLRAATMVGELYCVDSILGLSPLLPTQYNNPPPSKELITGDLSNRVETQHNKLCYLATDFYKVEVLPQSGCSKFDLISVNSASAKIVVIVLFTERGTRLGLIERVVSQEEQAGSGSGSGSGSGSGEHAPGAGPEAAHRQYLGPVVAPEPPDLVLPDAPDDVTDDALQALRRHHREHGAEFLEAVAALDTGGVERARRGFWRRGGAARLCARPAVAAWLRAADLQLFQRAADLLLPEVLRPIPPQLTQAIRNFAKSLQGALCGGGAPAAAARAQASAAAALAAALRRYTSLNHLAQAARAVLTNHHQIHQMLTDLNRVDFRVVRQQATWACSCGSAATAHRLEADFKATLGRGASLEQWAAWLADCVRRALAPHERRARYTARARRLLLDWSFYSSLVIRELTLRSAASFGSFHLIRLLYDEYVSYLIERRVAAHTHTPPIAVMHRMDDDGEDGEDSSCDVKDEDDQKLDWDWDDDDEEEDEPIENKKLKLSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -