Darc021484.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010005153.1:17984-23661[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 5.3e-05 1.3 9.6 0.0 24 50 34 63 29 65 0.80 2 3 0.00028 6.8 7.3 0.0 23 48 107 135 101 137 0.75 3 3 0.00033 7.9 7.1 0.2 37 48 228 239 213 245 0.74
Sequence Information
- Coding Sequence
- ATGGAGTCCGACACAGAAGTGCCAGGGGTATCAAAACAAACTCCAAGCCGGAAGAGTTCCGTGTGGAAACATTTCGACATTGTTGATAATGGCAAAAAGCTAGCGTCGTGTGGTATTTGCAGGAAAGTGTTGTCTTTTCGTACAACTATTTCAAATTTGAAGAAGCATTTTGACCTAAAGCACATTGCTACTCGTGACGAATACGAAAATGATGATTTCGGGGACGACTCAGTCGATGAGTGCACCAAACCGGTGCATGACATCCAAAAGTGCAGGAGCTCCATTTGGAAATACTTCTCGGTGGCTGACAAGACGGCCAGGAAGGCTACATGCAACTCCTGCTACGATGCCTTCTCATATAAAACTTCAATAACAAATCTTAAGAGACATTTGTATCATAAGCACAAGGATTTATATATAAAGATGATCAGATCATTCCGGGATGACAGTGGCAAGGAATCGGATAGCGATCTGCCTGTGCATAACGATAAGGAACAGAGGCTTCTGACGGCTGAATCTGATGAGGAAAGCAGCGATTATGATCTCCAATTTGAAGCTGATGAAGATGATGGCAAGCTCCCCAACCGAAGAGCATCAGCGTGGTACTTCTTCAAATGCCTGGACCCAGTCCTCAAGATATCTCAGTGCCTCATTTGTAAAAGAAGACTGTCTTTTGTAACCGTTTCTAACCTGAAAAGGCACTTGGAGAAGCGACATCCCAATGCCATGCCTCAACTGAAAGATGGGACTGAAATTATAATAGCGGCCGATGGACAATTCTACGAGGTTGAAAGGAACAGTTTTAAAAACAATAACGAAGACAACGATCAGAACATACCGGAAAAAGATCCTATTTACTGCGAAGATTATGGACAAGATCATACAATTGAAATGAAACCGCTCAAAAAAAGGAAAACTGTTAAAAATAGCAGAGAAAATCGCTGGAATGGTAACTCGGATGACGACGCTAACGGAAAGACACCTACCAGTGACAAGCAAGATTCTTTGAATCATTTCGCAAATTATGTCACGTCACTATTAAGACAACTTCCGAAAACGATATCGGATCAATTACAATCCGACATCATTAAACAGATTATGACTGCTAAAATATCGAATGAATTGACGGGATCTGCTACTGCTATTCCAAGTAGCAGCTATTCGATAACTATTACTAGTACAGAAAAAGATCGTGTCGATGGTTTGACCGACGTTTTGGAAGGAAAGCAATAA
- Protein Sequence
- MESDTEVPGVSKQTPSRKSSVWKHFDIVDNGKKLASCGICRKVLSFRTTISNLKKHFDLKHIATRDEYENDDFGDDSVDECTKPVHDIQKCRSSIWKYFSVADKTARKATCNSCYDAFSYKTSITNLKRHLYHKHKDLYIKMIRSFRDDSGKESDSDLPVHNDKEQRLLTAESDEESSDYDLQFEADEDDGKLPNRRASAWYFFKCLDPVLKISQCLICKRRLSFVTVSNLKRHLEKRHPNAMPQLKDGTEIIIAADGQFYEVERNSFKNNNEDNDQNIPEKDPIYCEDYGQDHTIEMKPLKKRKTVKNSRENRWNGNSDDDANGKTPTSDKQDSLNHFANYVTSLLRQLPKTISDQLQSDIIKQIMTAKISNELTGSATAIPSSSYSITITSTEKDRVDGLTDVLEGKQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00467552;
- 90% Identity
- iTF_00467552;
- 80% Identity
- iTF_00467552;