Darc007852.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- -
- Assembly
- GCA_016069955.1
- Location
- JACCPG010000224.1:59815-64086[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0028 0.24 12.3 1.0 3 23 57 78 56 78 0.96 2 23 0.2 17 6.5 0.3 1 22 458 479 458 479 0.95 3 23 3.9 3.3e+02 2.4 0.3 1 22 522 543 522 545 0.82 4 23 0.0052 0.44 11.5 1.5 3 21 556 574 556 575 0.96 5 23 0.45 38 5.4 0.0 3 23 584 605 582 605 0.88 6 23 0.01 0.87 10.6 0.2 3 23 626 647 624 647 0.96 7 23 0.0023 0.2 12.6 2.3 1 23 653 676 653 676 0.95 8 23 0.073 6.2 7.9 0.0 1 23 701 724 701 724 0.90 9 23 0.011 0.93 10.5 3.4 1 23 729 751 729 751 0.97 10 23 0.011 0.94 10.5 0.3 1 23 757 780 757 780 0.95 11 23 0.0013 0.12 13.3 1.3 1 23 793 815 793 815 0.97 12 23 0.0001 0.0088 16.9 1.8 1 23 864 887 864 887 0.97 13 23 0.00043 0.037 14.9 1.2 1 23 946 969 946 969 0.96 14 23 0.00054 0.046 14.6 2.0 2 23 996 1018 995 1018 0.95 15 23 0.0039 0.33 11.9 0.4 2 23 1024 1046 1023 1046 0.96 16 23 0.0057 0.49 11.4 0.2 1 21 1090 1110 1090 1111 0.95 17 23 0.00071 0.061 14.2 0.6 1 23 1121 1143 1121 1143 0.93 18 23 6.5e-05 0.0056 17.5 0.3 2 23 1226 1248 1226 1248 0.93 19 23 6.6e-07 5.7e-05 23.7 1.3 3 23 1255 1275 1254 1275 0.98 20 23 0.0089 0.76 10.8 0.2 1 23 1295 1317 1295 1317 0.97 21 23 0.083 7.1 7.7 0.0 1 23 1341 1363 1341 1363 0.98 22 23 0.016 1.4 10.0 0.6 1 23 1369 1392 1369 1392 0.95 23 23 0.00015 0.013 16.3 0.4 1 23 1400 1423 1400 1423 0.96
Sequence Information
- Coding Sequence
- ATGGAGAGTGATAAAGACGAAGATGATGAAGAAGAGGAGGAGATGAATGAGCCAGTGCAAAAGTACGCGAAAGTTCCCAACATGCCGGAGGTGTCAATAACAGTGATGCGACCTTCTGGTGAGACGCTTCACGCGCGGCAAGGTATCCAGCAGCTCGCCTCCAAGGACTGCCTGGTGTGCGGCCGCTCCTACCGGTACTCCCACAATGCGCGTCGGCATGAGCTCACAGCCCACAGTTTCGACAGATACACCAACAAGGTAACCAATAAGAAGGCCCATGCACACATGCAACCAAAACTAAGACCCAACCCATTTAATCCCAAAGCTAGGCTCATGCCTAATCCAATCAGCCACAAGATGCAATTCATGCCCAAGATAATACCATCAAGAGTCGTCCCGAACAAAGTTATCTCACCACCCAAACCTGTACCCATAAAAACTTTAAAGGGCTCCCAGAACAATTTGCCGTATCCGTTGCGAATTAAAGCTCTCAAAGATCTTCAAATTAAAAAGAAGGAGCCTCAAATTCTGAAGACTTTACTCACGTCGAAGCCAGAGGTCCTGGTTTCGGAGCCAGAAATAATCAACTCGGGCCCGGAGAGTCCTGAGACACTGATTTCTGAACCGGAAATTGCGTCATTTCAAGTAGAAGCCATTCTTTCCGAGCCCGATGCCTATGACCAGCAGGGTGAAGATGAAATGGACGGGGAGATGCAAAATAACCAAAGTCACAACTACGACACTGTCGATATGGAGTCGGACAACGAGATTGAGATCGCTCGGCAACACGGGCAGGGTGGTGAGGGAGAGGGTGAGGACCACAATGACAACGAGGATGGTAATCATGATGATGACAATAACATGGAAGGCCCTCACAGTGACAATGAGAAAGATCACGATGATACTGCCGAGAGTCAAGAAAATATGGAAATGGACACTGAAATGAAGGGCGATGACGACGCCAGAGAGGGTGAAGAAGGCCATGAGGACAAGGAACACGATGACCACGATGCCAATAATGAGGACAATGACGATGACTTTGACGACGATCTCCCGCCACTTGATATAGCTCCGGTTGTCGAGATCAATGAAGATATGCAGACAAACTCCTATAACAGTGAAATGAATGAAGAAGATGAAGATCTCGATGAGACCGCTGCCCACGACGACACTGTCGATGGAGAAGTCGGCGAAAAGGAACTCGATCCAGACAAAATATACATAACTAGAACACAAAGGGATTTCATTCAGAAATATCGTGATGTTATCCTACAGATAAATACTAAGCGCTGTGTTTGCTGTGACAAAGAGCATCCTCGCAGAAAGGCCGTCATCCAACATCTACAGAAAAATGGCCACAAAGTTCCAAAGCACACATGCTACAATTGCGTAGTCACCTTTGGCCATATTGGTGCTCTGCTTAGTCACATGAGGTCGAACTCTTGCACCGACCTGTGGAAGATTATTTACAATGAGAATGGAATCACTGATGAAATGGTTATCGAAGACGAGCCTAAAGATAACAAAGCACAACAGTATAAAGATATTTTGAACGCTAGATCGTACGCCTGCAAACTTTGCCCAGCTAAGTTCCAACTGAAGCAATTTATTATGAAGCACGTTCTCGATGTCCACGAGGACGGCCAGTCTCGAGTGCCGCTGGGCTGCGTACACTGCCGCGCCAGATACAAAGACAAAAGTTTACTGAAGAAACATATTCGTAACGGAGAATGCACTGTTTACATAGCTTGCGAGCTGTGTACGGAGAGATTTGTCAATCTTCAGGATTTCAGTGATCACGCCATCGGTGTTCACGCAGGCAACTACGACCAGTCTGATAATCAATCCAAGTGCGTCGACGGTCGCCCGACAGATTGTCCATTGTGCGGCAAGAAGAACTCCAGCTACCCGAATTTGGTGAAACATCTGAAGATAATACACAGCGAAGAAAAGCCGCATTACTGCCAACACTGTGACGCCAAGTTCGAGCAAACCGCGGAACTTAACCAGCACATTTATATGGAACATTCGGATAGAACTCTGGGTGTCAACGTGGAGCCCGACATGTCTCTGGTGAAGGAAGAGGCGGAGGAGTACCACTACTCGTGCACCGAGTGTAATGCTATATTCGAGACCGTCGACGCGTGGACGGATCATCAAGTGGCCGAGCACAATCAGGTGGCGCACCACTGCGACCAGTGCGAGAAGAAGTTCCTGCGACCCTCTGAACTAGCTGAGCACAAGAACACACACTTGCGAGTTAAGTTCTACCCTTGCAGTGTCTGTTCCAATTCTTACAGCACCCCACAAAAACTCTCCGAACACGTGCAACAGTCGCACCCGGGGGCCGCCGCCCAGGCCGCAATTGATTCCGAATTCTTCTGCGATATCTGTATCCGATCATTCAAGAGTCGCCAAGCTTACTCGAATCACATGCGCATTCACGCCAAAATACCTACTACGAACAGAAAACCTGGCGAGACTAAAGGATTCGCTCCGCAGATAATTGGAAAACCTATAAAACAGTTCGCTATGGTCCAACCCAGCATTGTGTCATTCAATCCTAGTTACAACGTCCCGAACGCGCCGTACTCGTGCGATATTTGCGGCAAAGGGTTTATGCACAAGAAGAATATATGGAAACATAAGAAAGTGCTTCACGCAGATTTACTCAACGATAGAAATGACAGCGAGGAGAACACGATGCAAGCCTCCACAGAGGAGGATGAATACAACGTTGACGAAAATGGCGCTGTGCTTTCCACGCCACAATTCAATAGTTTCAACTTTACCAACTTCAATAGCGTACCCCAAGTGGCACAAGATCCAACGCCGTTCTCATGCGAAATTTGCTCTAAACGATTCCCGCTTAGGACCAGTTTGTGGAAGCACAAACGCGCTAAGCACGGAATCATCAATCCCAGCGCAGGAGGCAGCAGTGAAACTCAGACACACTCGGGCGGCGGCGACAACAGTAGCCGGTCGAGCTGCACCATTTGTAAAATCTCTTTCTCTGACAAGAAGTCTTATTACCGTCATAGGAAGAATGTTCACAAATCTACTGCACAAATGTGTAAAATTTGTGGAAAAGCACTGAACTCGACGCAGGAACTTTATGAGCATCTTAAATCCACCCACGCTCGAGAATTGCTCGGCTACAACGCAAATCAAGGCTCAAACAAGTCTCAGGAGATAGCTCAAGATATGGAGCCCGAATATGACAACGATCAGGACGCGATCGATCCCAGCGTGGACTACCAGGCGCGGTACCCTTGCGATACTTGCGGTAAGCAATTCGTCGGTTTGCTGGCGTTGCAAAATCATCAATGTATTACCCAGAATTCCTCGCAACCTCAGACTTTTGACTGTGAAATTTGTCACAAGAGTTATACGTCCATTGCTGCATTGAAGAGTCACCGCGGCTGGCACTTGCGTTCGCCTGACGGCAAAGCAGCCGCAAACAACAGCGGCCTGTGGATGCCTCAACACAAAGTCACTAGCAAAGTGAGCAAACACGAAGTGGTCGGAGTCTCGGCCCCCGCATCATCCGTTATGAAGCGGCGGTTGCCGCCAGAAGTAGAAATAACTGTAGTGAATCCAAATAAAAAGATGCGCTCAGATGACTCTCTCGAGTTGGATCATCAGAATTCAAATACCGGTCCCCTGGAAGACAGGTACTGTACGATATGCGACAAGGAGTTCACGAAACGCGCGGCCTACCAGCGTCACATGGACGAAGTGCACCAACCGAACTCTGTGTTTTGCCCTGTGTGCGAGAAGAGTTTCACACGAAAGTCAACCTTACTCGTCCACATGAAGAAGCACTACGAGGGTGGCGAGAGTAGTACTGCAATTCCCATTGGGCAGTTGGAAGACGAGATGTTCTCGTGCGATTTGTGCGGCTCCCAGTACGACACAGAGAGCGCTTTGCAATTGCATCGGCTGAACCACGGGGAGGAGGACTCGGCCGAGTCGGATGATGATGATGAAGGCAGCATTCCAATAGCGCAGCCGGGTGAGTTCACGTGCGCGCAGTGCGGAGACGGGGTCGCCACTCCGCGAGACCTTATCGCCCACCGCTCCATGCACGCCACTCCGACCAAATTCTTCTGCAATATATGCAAAGTGTACTTCGCGCGAGCCCTCGACCTGTCCTCGCACACGCGCGCCCGACACGCGGACAACGAAAAGGTATTCTTTCCCTGCGCGATGTGCGACCGCTTCTACATGAACAAAAAGAGTTTGCAGCGGCACATCGAAATGGTACATTGA
- Protein Sequence
- MESDKDEDDEEEEEMNEPVQKYAKVPNMPEVSITVMRPSGETLHARQGIQQLASKDCLVCGRSYRYSHNARRHELTAHSFDRYTNKVTNKKAHAHMQPKLRPNPFNPKARLMPNPISHKMQFMPKIIPSRVVPNKVISPPKPVPIKTLKGSQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEIINSGPESPETLISEPEIASFQVEAILSEPDAYDQQGEDEMDGEMQNNQSHNYDTVDMESDNEIEIARQHGQGGEGEGEDHNDNEDGNHDDDNNMEGPHSDNEKDHDDTAESQENMEMDTEMKGDDDAREGEEGHEDKEHDDHDANNEDNDDDFDDDLPPLDIAPVVEINEDMQTNSYNSEMNEEDEDLDETAAHDDTVDGEVGEKELDPDKIYITRTQRDFIQKYRDVILQINTKRCVCCDKEHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRSNSCTDLWKIIYNENGITDEMVIEDEPKDNKAQQYKDILNARSYACKLCPAKFQLKQFIMKHVLDVHEDGQSRVPLGCVHCRARYKDKSLLKKHIRNGECTVYIACELCTERFVNLQDFSDHAIGVHAGNYDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHSEEKPHYCQHCDAKFEQTAELNQHIYMEHSDRTLGVNVEPDMSLVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCSNSYSTPQKLSEHVQQSHPGAAAQAAIDSEFFCDICIRSFKSRQAYSNHMRIHAKIPTTNRKPGETKGFAPQIIGKPIKQFAMVQPSIVSFNPSYNVPNAPYSCDICGKGFMHKKNIWKHKKVLHADLLNDRNDSEENTMQASTEEDEYNVDENGAVLSTPQFNSFNFTNFNSVPQVAQDPTPFSCEICSKRFPLRTSLWKHKRAKHGIINPSAGGSSETQTHSGGGDNSSRSSCTICKISFSDKKSYYRHRKNVHKSTAQMCKICGKALNSTQELYEHLKSTHARELLGYNANQGSNKSQEIAQDMEPEYDNDQDAIDPSVDYQARYPCDTCGKQFVGLLALQNHQCITQNSSQPQTFDCEICHKSYTSIAALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKVSKHEVVGVSAPASSVMKRRLPPEVEITVVNPNKKMRSDDSLELDHQNSNTGPLEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCEKSFTRKSTLLVHMKKHYEGGESSTAIPIGQLEDEMFSCDLCGSQYDTESALQLHRLNHGEEDSAESDDDDEGSIPIAQPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00468346;
- 90% Identity
- iTF_00468346;
- 80% Identity
- -