Darc018238.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- Hr39
- Assembly
- GCA_016069955.1
- Location
- JACCPG010000345.1:67435-71864[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.2e-07 0.0018 18.2 0.1 2 21 47 66 46 86 0.86 2 2 3.3e-66 2.6e-62 211.9 0.0 156 408 103 363 64 363 0.85
Sequence Information
- Coding Sequence
- ATGGACTCGCCATCTGTCACGTTGGCACCTATACACCTCTGCCTACCCCTTCTGGGACCCTTGTGGGAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATAAGGGAAGACCGCACCCGCGGCGGGCGGTCCACGTACCAGTGCTCGTACCCGCTGTCGAGCGCCGCGTCCACGGGCTCACTGCTCGCCGCGCACGCGCCCGCCACGCTGAGACACGCCTCCAGCCTCACCTGTGTAAACGGCCCCGGGTCATACACGAGTAGAGGGGAGTCCAGCAACAGCCGACTAACGCCTGACATCCCCCCATTATTACAGGAAATAATGGACGTAGAACACCTGTGGCAGTACAACGAGTCGGAGCTGACAAGACTAGGCAAGTCTGCAAGTCCTTCCGCCAACCCCCTCCTAGCGGCCAGTGGTATCACTGCGCAGAACTCCTCGCCGGACTTCCTGGCCGACTTGTGCAACATAGCCGACCATAGACTGTACAAGATCGTCAAGTGGTGCAAAAGCCTGCCTTTATTCAAGAACATCTCGATCGACGATCAGATCTGTCTACTGATCAACAGCTGGTGCGAGCTTTTAGTACTTTCGTGCTGCTACAGAGGTGTCAGTACTCCTGGCGAAGTGAGAGTGGGCGGCGGCCGTGGCATCACACTGCATCAGAGTGCAAAGTTGGGATTAACGCCGTGTATAGAGCGCATGCTGAGTTTTACCGATCATTTGCGGAGGCTGCGTGTCGACAGATACGAATATGTCGCCCTTAAAGTTATCGTACTACTTACATCAGACGCGCCAGAGTTACGAGAGTCTGAGAAAGTGCGAGCTTCGCAGGAGAAAGCGTTGGCAGCCCTACAAGCTTACATCGCAGCTCATTCCCCCTCCACTCCGGCCAAGTTTGGAGAATTACTGCTGCGTATACCCGAGCTGCAGCGCACTTGCCAGTTCTTCATGCAAGTCGGCAAGGAAATGCTGAACCCAGCTAACAAAAGCAAGGACGGCGACGGCCCCAGCTTCAACCTCCTCATGGAACTCCTCAGGGGAGATCACTGA
- Protein Sequence
- MDSPSVTLAPIHLCLPLLGPLWEXXXXXXXXXXXXXXXXXXXXXXXIREDRTRGGRSTYQCSYPLSSAASTGSLLAAHAPATLRHASSLTCVNGPGSYTSRGESSNSRLTPDIPPLLQEIMDVEHLWQYNESELTRLGKSASPSANPLLAASGITAQNSSPDFLADLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLVLSCCYRGVSTPGEVRVGGGRGITLHQSAKLGLTPCIERMLSFTDHLRRLRVDRYEYVALKVIVLLTSDAPELRESEKVRASQEKALAALQAYIAAHSPSTPAKFGELLLRIPELQRTCQFFMQVGKEMLNPANKSKDGDGPSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00156299;
- 90% Identity
- iTF_00467460; iTF_00467484; iTF_00467485;
- 80% Identity
- iTF_00467485;