Darc019548.1
Basic Information
- Insect
- Drepana arcuata
- Gene Symbol
- setdb1
- Assembly
- GCA_016069955.1
- Location
- JACCPG010000396.1:18415-37902[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.64 3.8e+03 -2.0 0.0 4 19 901 916 900 918 0.84 2 3 0.46 2.8e+03 -1.6 0.0 28 38 986 1008 970 1010 0.65 3 3 9.6e-12 5.7e-08 32.7 0.1 4 53 1040 1084 1037 1089 0.89
Sequence Information
- Coding Sequence
- ATGGAAGGAGTTGCATCAGAGGCGCCGACAAGAGCTCAGCTCTTAAAGCAAAGGTGTCTGTCATGGCGTATAGGGAGGTCAAAGAGATTGCGCTGGACAGAGGCAAATGGAAGGAGTTGCATCAGAGACGCCGACAAGAGCCCAGCTCTTAAAGCAAAGGTGTCTGTCATGGCGTATAGGGAGAACCTGATCAACGGTATCAAAGCGCTGACTCCTCTCTTAGACTTGGCCATGGAGCAAGAGTCAGAGGACTTAGTGGAGATATCCGACTCGGAGTCGGAGGACGAGGCCGATGTCCACGACGAGCCCAAAGAGACCATCGGCGTAGAGGGGGCTAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTGGCGGAAAATTACTGGAAGAGAACCTGGCGAATGTCATCAATGAAACGTGGGAGAAATACAATATGGACACGCGCTTAAAGGACACACAAGACATTTTGGACACTGAGATTCATAAGCTAGAGATGGAGAGTGAAGAAATTGATATGATGCTAGCGGAATGCCAGGTGGCGACGGATAAGCTCAGATCGGATCTGTACTCCACATTCCGCTGCAGGAGGAAGCAGCTTACGGGTCTTATTATCTGCGACACTCCATATGCCGAGTACTCTGTGGTAGAGGAAGCAGCGCCTGTAGCCGAAAGTGAGATCCGTGAGCCTAAGCGGCGTCTATCGTCCGGTGACGACATGCCGGCCAAGCGGCCACCCATCCCGTTGGGGTACGCGCCTTTGGACGACTCCAACGCTGTACAAAATGTAGACGAATGCAAGAGCCCTGGTCCAGATAGTGATATATCGACTAAAGATGACGACGATAAGGACATATCCGTCGTGAAGTTGTCCGCGGAGGCGGCGCCGCCGGACCTGCCGCCGCGGGCGGCGGGGGAGCCCCCCCGGGCGCCGCTGCGGCCCGGCATGGAGGTGTACGCCATGAAGAATGCCTTCGGCGCCTGGCTCAGGGCCAAGGTGGTGGAATGTCAGCCCAAGGCTGCAAATATGGAGTGGACTATGTGCGGCGTGACCTTCGTGGACAAAGTGAAGATTCCTACCAAGGTCATAGCGGGCCGGTGTCTCGCCTACTCCCATCCCTCCGAGTACAGGATGACCATTGGTACGCGTGTGATAGCCCTGTTCAAGGACACAGCGAACGCGAACAAACGCGATTCCTTCTACTCGGGCATAATCGCCGAGATACCGAACCCTGTCAATAATTACAGGTGTTACATCCGGCACGCCGACACGCGGCTCGTGTGCGAGTCCTCGACTGTGGTGTGGCAGGACATGCACCCCTTCTCCAGGAGCTTCGTGCGCGACTACCTCACGGCCTACCCCGAGCGACCCATGGTGCGCCTGCACGCGGGCCAGAAGCTCAGGACGGAGTGGAACGCTGCCCGACTGGGGCAGGACCTCCACCTTATAGAAGTCCGTAGACAAATAACACAATTTATTGTGTTGTGTTCCTACGCGGTGAATAAGGTTTCCAGTAACGAGCTCCTTGGGGAGGGGGAGGTCCGTGAGCCTAAGCGGCGTCTATCGTCCGGTGACGACATGCCGGCCAAGCGGCCACCCATCCCGTTGGGGTACGCGCCTTTGGATGACTCCAACGCTGTACAAAATGTAGACGAATGCAAGAGCCCTGGTCCAGATATTGATATATCGACTAAAGATGACGACGATAAGGACATATCCGTCGTGAAGTTGTCCGCGGAGGCGGCGCCACCGGACCTGCCGCCGCGGGCGGCGGGGGAGCCCCCCCGGGCGCCGCTGCGGCCCGGCATGGAGGTGTACGCCATGAAGAATGCCTTCGGCGCCTGGCTCAGGGCCAAGGTGGTGGAATGTCAGCCGAAGGCTGCAAATATGGAGTGGACTATGTGCGGCGTGACCTTCGTGGACAAAGTGAAGATTCCTACCAAGGTCATAGCGGGCCGGTGTCTCGCCTACTCCCATCCCTCCGAGTACAGGATGACCATTGGTACGCGTGTGATAGCCCTGTTCAAGGACACAGCGAACGCGAACAAACGCGATTCCTTCTACTCGGGCATAATCGCCGAGATACCGAACCCTGTCAATAATTACAGGTACCTGGTATTCTTCGACGTGGGCTCGGCGCAGTACATCCGGCACGCCGACACGCGGCTCGTGTGCGAGTCCTCGACTGTGGTGTGGCAGGACATGCACCCCTTCTCCAGGAGCTTCGTGCGCGACTACCTCACGGCCTACCCCGAGCGACCCATGGTGCGCCTGCACGCGGGCCAGAAGCTCAGGACGGAGTGGAACGGTCAATGGTGGAGCTCGTGCGTGGTGCAGGTGGACGCGTCGCTGGTGGAAGTGCACTTCGCGGGCGACGGGCGCCGCGAGTGGATCTACCGCGGGTCCACGCGCCTCGAGCCCTTGTACAACGAGCTGCAAGTGGCGCAGCGGCACAAGCATCGCGCCTTGCCGAGGAGCAAGGCACAGCCCAGGGTAAGCAGCTTCTGGAGAGATGCTTGCACGTGCTTGGAAGGGGATGTTGAACAAGATAATCTTCGATGCCACAGACTGTTCGCAGTGGGCACACATCGCAAAGTATCACGTGCACACTCCCCTGTACCTCGCACTCTCACTGCACTCAGTGCCCTCTTGGAGTCCAACCCTGACTGTGACGTGTTCAAGGACGGATGGAAGGCTATCATGGCGGCATGGCTGGACTATTGTGAGATGAGTAGCAACCTTCCGGCGCCGTACGTGGAGTACACCCGGACTGACGAGCAGGGAAGCAGTAAGGTACACACCACCCAGGAGCAGCCGCCGCCGGTGGCGACGCCGCAGCAACAGAGGCATACCGAGGAACTGCGTCGCCAGCGTGCGGTGGCTAAGAAATCCACCTCAGCTTCTTCATCAGCGCCGCCCACAGCATCCACGGGGAGCAACCTCGACTCAGTCACCAGTCGAGTTGTGTATTATACACCCAAAAACGCGGTGAAACCCTACAAAATGACGGCGCACACGTGCGGACCAAAGTGCAAGCGGAGCGATGTTCTCGCCCTCAAGGACCTTCGCACCTACAACCCCCTGGCAAAGCCCCTCCTCAGCGGCTGGGAGAGGCAGCTGGTACGCTACAAGGGCCACAAGGAGGTGATGTACCGCGCGCCGTGCGGCCGGCGCGTGCGCAGCATGGCCGAGCTGCACCGCTACCTGTGTGTGTGTGTGTGTGTGTGTAACCTCAGTGTGTGGGCGGCAGGC
- Protein Sequence
- MEGVASEAPTRAQLLKQRCLSWRIGRSKRLRWTEANGRSCIRDADKSPALKAKVSVMAYRENLINGIKALTPLLDLAMEQESEDLVEISDSESEDEADVHDEPKETIGVEGAKXXXXXXXXXXXXXXXXXXXXXXXXXSGGKLLEENLANVINETWEKYNMDTRLKDTQDILDTEIHKLEMESEEIDMMLAECQVATDKLRSDLYSTFRCRRKQLTGLIICDTPYAEYSVVEEAAPVAESEIREPKRRLSSGDDMPAKRPPIPLGYAPLDDSNAVQNVDECKSPGPDSDISTKDDDDKDISVVKLSAEAAPPDLPPRAAGEPPRAPLRPGMEVYAMKNAFGAWLRAKVVECQPKAANMEWTMCGVTFVDKVKIPTKVIAGRCLAYSHPSEYRMTIGTRVIALFKDTANANKRDSFYSGIIAEIPNPVNNYRCYIRHADTRLVCESSTVVWQDMHPFSRSFVRDYLTAYPERPMVRLHAGQKLRTEWNAARLGQDLHLIEVRRQITQFIVLCSYAVNKVSSNELLGEGEVREPKRRLSSGDDMPAKRPPIPLGYAPLDDSNAVQNVDECKSPGPDIDISTKDDDDKDISVVKLSAEAAPPDLPPRAAGEPPRAPLRPGMEVYAMKNAFGAWLRAKVVECQPKAANMEWTMCGVTFVDKVKIPTKVIAGRCLAYSHPSEYRMTIGTRVIALFKDTANANKRDSFYSGIIAEIPNPVNNYRYLVFFDVGSAQYIRHADTRLVCESSTVVWQDMHPFSRSFVRDYLTAYPERPMVRLHAGQKLRTEWNGQWWSSCVVQVDASLVEVHFAGDGRREWIYRGSTRLEPLYNELQVAQRHKHRALPRSKAQPRVSSFWRDACTCLEGDVEQDNLRCHRLFAVGTHRKVSRAHSPVPRTLTALSALLESNPDCDVFKDGWKAIMAAWLDYCEMSSNLPAPYVEYTRTDEQGSSKVHTTQEQPPPVATPQQQRHTEELRRQRAVAKKSTSASSSAPPTASTGSNLDSVTSRVVYYTPKNAVKPYKMTAHTCGPKCKRSDVLALKDLRTYNPLAKPLLSGWERQLVRYKGHKEVMYRAPCGRRVRSMAELHRYLCVCVCVCNLSVWAAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -