Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:7084862-7090273[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.27 3.3e+02 2.9 0.3 21 44 6 29 3 33 0.89

2 12 0.73 9.1e+02 1.5 1.3 19 43 32 56 18 66 0.78

3 12 0.39 4.9e+02 2.4 0.7 17 44 72 101 63 109 0.80

4 12 0.7 8.8e+02 1.6 0.0 26 44 111 129 103 134 0.86

5 12 0.033 41 5.8 0.0 21 44 134 157 130 161 0.89

6 12 0.029 37 6.0 0.1 21 43 162 184 159 191 0.89

7 12 0.12 1.5e+02 4.1 0.3 23 44 192 213 188 221 0.84

8 12 0.38 4.8e+02 2.4 0.0 21 43 218 240 215 246 0.88

9 12 0.011 14 7.3 0.0 22 44 247 269 243 277 0.86

10 12 0.022 28 6.4 0.1 21 50 274 302 271 305 0.82

11 12 0.26 3.3e+02 3.0 0.0 21 44 302 325 298 330 0.89

12 12 0.0054 6.8 8.3 0.2 21 44 330 353 327 359 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.27	3.3e+02	2.9	0.3	21	44	6	29	3	33	0.89
2	12	0.73	9.1e+02	1.5	1.3	19	43	32	56	18	66	0.78
3	12	0.39	4.9e+02	2.4	0.7	17	44	72	101	63	109	0.80
4	12	0.7	8.8e+02	1.6	0.0	26	44	111	129	103	134	0.86
5	12	0.033	41	5.8	0.0	21	44	134	157	130	161	0.89
6	12	0.029	37	6.0	0.1	21	43	162	184	159	191	0.89
7	12	0.12	1.5e+02	4.1	0.3	23	44	192	213	188	221	0.84
8	12	0.38	4.8e+02	2.4	0.0	21	43	218	240	215	246	0.88
9	12	0.011	14	7.3	0.0	22	44	247	269	243	277	0.86
10	12	0.022	28	6.4	0.1	21	50	274	302	271	305	0.82
11	12	0.26	3.3e+02	3.0	0.0	21	44	302	325	298	330	0.89
12	12	0.0054	6.8	8.3	0.2	21	44	330	353	327	359	0.90

Sequence Information

Coding Sequence: ATGTTAACACACAGCGATGAGAAACCCTTAAGATGTGGTGCTTGCGATTACAGATGTCGAGATCCTGTAGGTTTACGACGGCACGTGTTAACACATACCGACGAGAGGCCCTacagctgtgatctttgcgattacaaaggCCGACAGCTTAcacatttgaaacagcacaggttacaacacaccggcgagaggccgttcagATTCCAATGGATTTCTAAATCTCAATCGCCAAACAAAAGAACGATCGAGTGTCGCGTGTGCGCGACCAAACTCAAATCCCACAGAAGCATAAGCAAGCACATACTGATGCACGCCGACGAGAAGCTCCTCAGATGTGCCGTGTGCGATTACAAATTCAAGGACACCGGAAAGCTGCGGAGGCACATGATGtcgcacaccgacgagaagccgttcggctGCGAGCACTGCGACTATAAATGCCGGGACTCCACGAAACTGAAACGGCACATGTTGATACACAGCGACGAGAAGCCGTACTTCTGCGGcctctgcgattacaaatgccgcaCCGCCAGGAACTTAAAGCTGCACGAGTTCATCCACACCGGCGAcatgccgttcagttgcgagCTCTGCGAATACAAGTGCCGGGATTCCACGAGGTTGAGACAGCACACGTTGgtgcacaccggcgagaagccgtacagttgcgatctttgcgattacaagtgtcgaGGGCCCAGGGATCTGAAACTGCACAAGCTGGTGCACACCGGTGAAATGCCGTTCGGTTGTGcactttgcgattacaaatgccgcgAGTCCACGAAGCTGAAGCGGCACATGCTGACGCACACCGgggagaagccgttcagttgcgactATTGCGATTACAGGTGTTTAACATCGGCGAACTTGAAGCGGCACATGTTGACGCACACCGCCGAGAAGCCGTACGGTTGTGAGCTTTGCGGTTGTAAATTCCGACAGCTCCCGCATTTGAAGGGGCACATGTtgacgcacaccggcgagaagccctTCAGCTGTGACCTTTGCGACTACAAGTGCCGACAGTCCGCccatttgaaacagcacatgttGACGCACCAACGGCGAGGAGCCCTTCAAATTTAG
Protein Sequence: MLTHSDEKPLRCGACDYRCRDPVGLRRHVLTHTDERPYSCDLCDYKGRQLTHLKQHRLQHTGERPFRFQWISKSQSPNKRTIECRVCATKLKSHRSISKHILMHADEKLLRCAVCDYKFKDTGKLRRHMMSHTDEKPFGCEHCDYKCRDSTKLKRHMLIHSDEKPYFCGLCDYKCRTARNLKLHEFIHTGDMPFSCELCEYKCRDSTRLRQHTLVHTGEKPYSCDLCDYKCRGPRDLKLHKLVHTGEMPFGCALCDYKCRESTKLKRHMLTHTGEKPFSCDYCDYRCLTSANLKRHMLTHTAEKPYGCELCGCKFRQLPHLKGHMLTHTGEKPFSCDLCDYKCRQSAHLKQHMLTHQRRGALQI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465338;
90% Identity: iTF_00465338;
80% Identity: iTF_00466783;