Dpar000769.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:5384722-5387972[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.019 24 6.6 0.0 22 47 30 55 28 60 0.84 2 7 0.044 56 5.4 0.2 21 43 57 79 43 86 0.84 3 7 0.49 6.2e+02 2.1 0.1 21 45 85 109 80 114 0.86 4 7 0.25 3.1e+02 3.0 0.0 22 44 115 137 109 142 0.88 5 7 0.063 80 4.9 0.3 23 44 145 166 141 174 0.85 6 7 0.0057 7.2 8.3 0.0 21 49 171 198 166 200 0.90 7 7 0.0022 2.8 9.6 0.1 21 44 200 223 196 232 0.87
Sequence Information
- Coding Sequence
- ATGTCCATCGTGACTCAATCTAGCGCAAGGTTCTTTAGTAAAGCGAACCCCTGGTTTCAAAGGACGTTCGAATATATAATTCCGGACGAAAGTCCATCCGAATGCCCTATTTGcggtgtaaaatttaaaacaccCGGATACATACGCAAGCATATGATGATACATAcaggcgagaaaccgttcagttgtgacctctgcgattacaagtgtcggCAGCCCGGGAGCTTGAGGCATCACAGGTTGGCACACATCGGCGAGGAGCCgatcagttgtgatctttgtggTTACAACTGCCGAGGTGCGGTGCAATTGAAGCAGCACATGTCAACGCACTTCGTCGGAGAGAAGCCTTTCCGATGTGACATTTGCGATTACAGATCGCAACTATTCGGAAATTTAAAACGGCACATGACCAAGCACACCGGCGGCAAGAAGCCGTTCTGCtgcgacctttgcgattacaagtgccggCAACCTGGGAATTTGAGACTGCACAGGTTGATACACACCGgagagaagccgttcggttgtgatctttgcgattacaggtGCCGGGAATCGGGAAAGTTGAAGCGGCACATGTTGACGCACTTCGACGGggagaagccgttcagctgcGACCTTTGCGAGTACAAGTGTCGACAATCCGGAAGCATGAAGCGGCACATGCttacgcacaccggcgagaaaccgttcagttCCAATCAAGAAGGCTTCTTGCAGAAACGTCAGTTACGCTTGACTTTTTCTGTTAACGAAATGCTTAGAGAAATCAGCGAGGTTCTTCTTTGTAAAGGTAACATTATAAGATGGATATGCGCTATCTTCTGCATCTTTTTCATAGTAACCTCAGTTGTCGCGTTGTTGTTGGTTTTTCTGGCACCGTCCTCCTTCGCTTGGCTAGTCGGTGCAGAGACTTTGACGAAAACGGAAGTGATATGTGTATGTATTTTTGCGAGCATCAAGATCGTGTCTTGCCTCTTCATCATATCGAACTTGAGGGGAGAGAAGCAGCACGCAATTTTGTTCTGGATATTCGTGAATTTCGCGATCTGGCACGTGCCCTTCGTGTGGGCCTTGATGAACATAAGTTTCTACGTGCTGAGAACCCGAAAACAAATATACCTCTTAGAGCCCTTGGTGATAGCTCTACCATCGCTGGTATTCCAGTGTGTTTGGTTGTCTTTTATAATGCTGCTGTGGTATTACTGGCAGCAACTCTCCTTGCAACCTGATATACCCTGCTACGTGTACCATTTGAGAAAGAATACGTTGAAGAAGAGAGCCCTTAGGGAAGACCTTGAAGAACGCCTGGGGGAAGATCCACCCAAGTTCTTGACTAACTTGGACGCGCCAGGTGGACGCGTTGCTACCGCTGACGTTGAATGA
- Protein Sequence
- MSIVTQSSARFFSKANPWFQRTFEYIIPDESPSECPICGVKFKTPGYIRKHMMIHTGEKPFSCDLCDYKCRQPGSLRHHRLAHIGEEPISCDLCGYNCRGAVQLKQHMSTHFVGEKPFRCDICDYRSQLFGNLKRHMTKHTGGKKPFCCDLCDYKCRQPGNLRLHRLIHTGEKPFGCDLCDYRCRESGKLKRHMLTHFDGEKPFSCDLCEYKCRQSGSMKRHMLTHTGEKPFSSNQEGFLQKRQLRLTFSVNEMLREISEVLLCKGNIIRWICAIFCIFFIVTSVVALLLVFLAPSSFAWLVGAETLTKTEVICVCIFASIKIVSCLFIISNLRGEKQHAILFWIFVNFAIWHVPFVWALMNISFYVLRTRKQIYLLEPLVIALPSLVFQCVWLSFIMLLWYYWQQLSLQPDIPCYVYHLRKNTLKKRALREDLEERLGEDPPKFLTNLDAPGGRVATADVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466876;
- 90% Identity
- iTF_00466876;
- 80% Identity
- iTF_00466876;