Dpar000796.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:5663149-5665116[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.45 5.7e+02 2.2 0.0 20 44 28 52 16 61 0.83 2 11 0.1 1.3e+02 4.3 0.5 23 44 87 108 83 116 0.87 3 11 0.0032 4 9.1 0.0 23 45 195 217 192 224 0.85 4 11 0.59 7.5e+02 1.8 0.0 21 44 245 268 235 276 0.88 5 11 0.0069 8.7 8.0 0.1 23 44 303 324 300 333 0.87 6 11 1.7 2.1e+03 0.3 0.0 21 44 355 378 346 383 0.83 7 11 0.0042 5.3 8.7 0.2 23 44 413 434 406 440 0.89 8 11 0.12 1.5e+02 4.0 0.0 21 44 463 486 452 496 0.86 9 11 0.16 2.1e+02 3.6 0.1 23 47 521 545 514 552 0.84 10 11 0.85 1.1e+03 1.3 0.1 21 44 575 598 572 606 0.78 11 11 0.64 8.1e+02 1.7 0.0 22 48 604 629 601 635 0.84
Sequence Information
- Coding Sequence
- ATGATGCAAGCCACCAAAACGACCGAACGCCgaatatttaaaaatcgaaGAGGATCTACGGACAAGCACATTCTGACACATTCGGACGAAAAACCATTCGCCTGTGAATTGTGCGGTCACAGATTCCGCATTGTCGGGGTCTTGAAGCGGCATATCTtaacacacaccgacgagaaaccattcagttgtgaccattgcgattacaaatgccatCGAGCTGGAGACTTAAAGAAGCACAAGTTAATACACACTGACTTCAAGCCGTTCTGCTGTAAATACTGCGATTATAAGTGTCGACAAGTCGGGAATCTAAATCGTCACGTTTTGATACACACCGATAAGGATCCGTTTAGTCGCCGTCTTAAATCCAGGCGAGCCGAAAATCGCAAACAGGTTCTGAAACATTCAGACGAGAAATCATTCAACTGTGAAATCTGCGGTTACAAGTGCCAGAAGGCCGGGGTCTTGAAGCAgcacatgttaacacacacCGATGAGAAGCGGTTCAGttgcgacctttgcgattacaaatgccaacGAGCCGGAGacttaaaaagtcacaagttaATACACACTGACTTCAAGCCGTTCTGTTGTGAATACTGCGGTTATAAGACTCGACAGTCCGGGAATTTAAAGCGTCACATTTTGATGCACACCGAGAAGGATCCGTTTAGTCGCCGCCTTAAATACAGGGGAGCCAGAAATGGCAAACACGTTCTGAAACATTCGGACGAGAAACCATTCATCTGTGAATTCTGCGGTTACAAGTGCCGAACGGCCGGGAACTTGAAGCTgcacatgttaacacacacCGAAGAGAAGCGGTTCAGTtgcggtctttgcgattacaaatgccatCGAGCTGCGGacttaaaaagtcacaagttaATACACACTGACTTCAAGCCGTACTGTTGTGAATACTGCGGTTATAAGAGTCGACAATCCGGGAATTTAAAGCGTCACATTTTGATACACACCGAGGAGGCTCCGGCTAGATGCCGTCTTAAATCCAGGCGAGGCGGAAATTGCAAGCAAGTTCTGAAACATTCGCATTCGGACGAAAAACCATTCATCTGTGAATTCTGCGGTTACAAGTGCCGAAAGGCCAGCAGCTTGAAGGTgcacatgttaacacacaccgacgagaagcggTTCAGttgcgacctttgcgattacaaatgccatCGAGCTGCGGACTTAAAAAATCACAGGTTAATACATACCGACGTCAAACCATTCTGTTGTAAATACTGCGGTTATAAGACTCGACAATCGGGGAATTTAAAGCGTCACATTTTGATACACACCGAAAGGGATCCGTTAAGTTGCCGTCTTAACTCCAGACGAGCCGGAAATGGCAAACACGTTCTGAATAATTCGGACGAAAAACCATTCATCTGTGAATTCTGCGGTTACGAGTGCCGAACGGCCGGGAACTTTAAGCGgcacatgttaacacacacCCACGAGAAGCGGTTCAGttgcgacctttgcgattacaaatgccgtcGAGCTGCGGACTTAAAAAATCACAggttaatacacaccgacgTCAAACCATTCCGTTGTGGATACTGCGATTATAAGAGCCGACAAATCGGGAATTTAAATCGTCACATTTTAATACACACAGGCGATAAACCGTTTGCTTGCAATATGTGCGATTATAAAGGCCGGGAGCTATCGAAATTAAAACagcacatgttaacgcacaccgACGAGAGGCCGTTgacttgtgatctttgcgattataaatgccgaatcTTGTCGAAGTTGAAAATACACATGTTGATGCATACCGATGAAAAACCGTTCAGCTGTAATTTATGCGATTACAAGTTCAAGGAATTGAGTTCACTAAAACGACACGTGTCGAAGCATATGAATAAGAGTGCAAGTCATCCAAATGATGGCGATCATCCAAATGACACCGACGAGAAACTATTCGAAGAACTGCAATAG
- Protein Sequence
- MMQATKTTERRIFKNRRGSTDKHILTHSDEKPFACELCGHRFRIVGVLKRHILTHTDEKPFSCDHCDYKCHRAGDLKKHKLIHTDFKPFCCKYCDYKCRQVGNLNRHVLIHTDKDPFSRRLKSRRAENRKQVLKHSDEKSFNCEICGYKCQKAGVLKQHMLTHTDEKRFSCDLCDYKCQRAGDLKSHKLIHTDFKPFCCEYCGYKTRQSGNLKRHILMHTEKDPFSRRLKYRGARNGKHVLKHSDEKPFICEFCGYKCRTAGNLKLHMLTHTEEKRFSCGLCDYKCHRAADLKSHKLIHTDFKPYCCEYCGYKSRQSGNLKRHILIHTEEAPARCRLKSRRGGNCKQVLKHSHSDEKPFICEFCGYKCRKASSLKVHMLTHTDEKRFSCDLCDYKCHRAADLKNHRLIHTDVKPFCCKYCGYKTRQSGNLKRHILIHTERDPLSCRLNSRRAGNGKHVLNNSDEKPFICEFCGYECRTAGNFKRHMLTHTHEKRFSCDLCDYKCRRAADLKNHRLIHTDVKPFRCGYCDYKSRQIGNLNRHILIHTGDKPFACNMCDYKGRELSKLKQHMLTHTDERPLTCDLCDYKCRILSKLKIHMLMHTDEKPFSCNLCDYKFKELSSLKRHVSKHMNKSASHPNDGDHPNDTDEKLFEELQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466624;
- 90% Identity
- iTF_00466624;
- 80% Identity
- iTF_00466624;