Dpar001028.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:7909252-7909710[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00042 0.53 11.9 0.2 26 46 11 31 4 37 0.84 2 5 0.28 3.6e+02 2.8 0.0 21 46 34 59 31 65 0.84 3 5 0.065 82 4.9 0.1 21 44 68 91 63 98 0.87 4 5 0.0016 2 10.0 0.1 25 48 100 122 93 124 0.88 5 5 0.01 13 7.5 0.5 18 48 121 151 120 152 0.94
Sequence Information
- Coding Sequence
- ATGTTAACCCATTCCGACAAGAGGCGGTACAGTTGCAAGCTGTGCGACTCCGCGTTCAGACAATCCCATCATCTGAAGCGTCATATGTTAGtacacaccggtgagaagccattcagttgtagTTTATGTACGCACAAGAGTGGATCTAAGGGAGATTTGAAAAAACACATGGAAACCCACATTGATAAAAAATACCGATATACTGAAAAGTCGATTAGTTGCAGTCTATGCGATTTTAAGTGCGTAGCATCGGGTAATTTAAGACAGCACATGTTAACCCATTCCGACGTTAAAGCGTTCACCTGTAACCTCTGCGATTCCAAATTCAGGCAATCCGGCCATTTGAAGTCACATATGTTGAGACATAACAGCGAGAAGCCCTACAGTTGTGATTCTTGCGATTACAGGAGCCGAACTAGGGGAGATCTGAACAAGCACGTCAACCGACGTCATTCGTAA
- Protein Sequence
- MLTHSDKRRYSCKLCDSAFRQSHHLKRHMLVHTGEKPFSCSLCTHKSGSKGDLKKHMETHIDKKYRYTEKSISCSLCDFKCVASGNLRQHMLTHSDVKAFTCNLCDSKFRQSGHLKSHMLRHNSEKPYSCDSCDYRSRTRGDLNKHVNRRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466924;
- 90% Identity
- iTF_00466924;
- 80% Identity
- iTF_00466912;