Dpar001658.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:14157866-14159298[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 6 0.008 10 7.8 0.1 26 52 129 155 121 156 0.83 2 6 0.13 1.7e+02 3.9 0.0 21 44 152 175 148 179 0.89 3 6 0.47 5.9e+02 2.1 0.0 25 47 184 206 177 211 0.82 4 6 0.0041 5.2 8.7 0.1 21 48 208 235 204 239 0.87 5 6 0.032 41 5.8 0.2 21 46 236 261 233 267 0.84 6 6 0.0003 0.37 12.4 0.1 23 51 266 293 262 295 0.89
Sequence Information
- Coding Sequence
- ATGTCTTCAGAGGAAGTCCTCGTGCAAATCGCAGAGGTAAGAACATTACAAGCGGATGATGTACTTAAAGATGATTCAAAGGAATTTCAGCCCGTGGAAATGCTGGAAGAAAATTACACGTTGCTTCCGTATATCAAAGTGGATGACGAGGGCCTGATGGTTTTGAACGAGGAGATCTACGAGGAGCAAGCGAGCGACGAGCAAGTGCTTTGCGTCCCTATAACCGAGACACTATTTGACTGTAACATTGAGAGTGATATAATCGAGGAACAGGTGGAATCAGGCGATTTCCTCAGTGAGCATAACTATCACACTATTTCCGATGGGGAGAATCCCTATGATATGTATCTTGAAGACATGATCAGCAAGGATAATTCGAAACTGCAATGCCCCTTGTGCATGAAGGTGTTGAAAGCGACTGACGCTTTCTATCGACATTTAAGGATACATTCGGGGGAGAAACCATATCAGTGTGAGCTTTGTGATAAGAAGTTTTCACAACAGAGTAATTTGTGGAAGCACATCCTTATTCATACAGGAGAAAGAAGATTTGAATGCCCTCAGTGCGGCAAGAAATTCTCTCAGAGAGCCAACATGCAAAAGCATATGATGGTTCACACCGGAGAAAAACCTTTCGAATGTTACATTTGCTCAAGGTTGTTCACTCAAAGAGCTAACTTAAACAAACACATTAGGATACATACAGGAGAAAAACCTTACACTTGTAAATACTGTAGCCGACAATTCGCACAGCAATCCAACATGCAGAAGCATGAACTTCTTCACGAAGGCCTGAAACCATTTTCGTGCGGAATTTGTTCGGCCGCCTTCGCTCAGCAGAGCAACTTAAAGAAGCACGTCGTGACCCATTTCAACAAAGAGAGGACCCACAAGTCCGTCGCTGCCAGAACATGTGATATGTCTAAGTCATACTCTGTGGTTTGTGAGAACCCTTACACCAAAACTGATTTGTATTACGGACAAGTAAAAGACTGCATAGTTGAACCGGGCACGTTCCTAGACACCTTAATGGATGGTAGAAATCAAGTCTACTTCGATTCGTCCAGCAACGTGAAAATCGAGATCGAGCTTGAACAGAATAggtcattttaa
- Protein Sequence
- MSSEEVLVQIAEVRTLQADDVLKDDSKEFQPVEMLEENYTLLPYIKVDDEGLMVLNEEIYEEQASDEQVLCVPITETLFDCNIESDIIEEQVESGDFLSEHNYHTISDGENPYDMYLEDMISKDNSKLQCPLCMKVLKATDAFYRHLRIHSGEKPYQCELCDKKFSQQSNLWKHILIHTGERRFECPQCGKKFSQRANMQKHMMVHTGEKPFECYICSRLFTQRANLNKHIRIHTGEKPYTCKYCSRQFAQQSNMQKHELLHEGLKPFSCGICSAAFAQQSNLKKHVVTHFNKERTHKSVAARTCDMSKSYSVVCENPYTKTDLYYGQVKDCIVEPGTFLDTLMDGRNQVYFDSSSNVKIEIELEQNRSF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01258471;
- 90% Identity
- iTF_00466755;
- 80% Identity
- iTF_00466755;