Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:7081550-7083565[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.016 20 6.9 0.0 22 43 54 75 50 82 0.90

2 14 2.4 3e+03 -0.1 0.0 21 44 81 104 76 109 0.80

3 14 4.1e-05 0.051 15.1 0.3 21 43 109 131 102 137 0.92

4 14 1 1.3e+03 1.0 0.1 20 33 137 150 133 160 0.77

5 14 0.0061 7.6 8.2 0.5 21 44 184 207 161 216 0.85

6 14 0.52 6.6e+02 2.0 0.1 9 44 228 263 223 272 0.77

7 14 8.3e-05 0.1 14.1 0.1 21 52 273 304 265 306 0.91

8 14 0.0025 3.1 9.4 0.1 23 43 303 323 300 333 0.89

9 14 1.4 1.8e+03 0.6 0.1 26 44 377 395 374 402 0.87

10 14 1 1.3e+03 1.0 0.2 26 48 404 430 397 435 0.81

11 14 2.2 2.7e+03 -0.0 0.1 24 48 430 453 424 459 0.84

12 14 2 2.5e+03 0.1 0.1 27 46 461 480 452 486 0.85

13 14 0.29 3.6e+02 2.8 0.1 23 48 485 510 480 514 0.87

14 14 0.39 4.9e+02 2.4 0.6 26 44 515 533 509 538 0.78

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.016	20	6.9	0.0	22	43	54	75	50	82	0.90
2	14	2.4	3e+03	-0.1	0.0	21	44	81	104	76	109	0.80
3	14	4.1e-05	0.051	15.1	0.3	21	43	109	131	102	137	0.92
4	14	1	1.3e+03	1.0	0.1	20	33	137	150	133	160	0.77
5	14	0.0061	7.6	8.2	0.5	21	44	184	207	161	216	0.85
6	14	0.52	6.6e+02	2.0	0.1	9	44	228	263	223	272	0.77
7	14	8.3e-05	0.1	14.1	0.1	21	52	273	304	265	306	0.91
8	14	0.0025	3.1	9.4	0.1	23	43	303	323	300	333	0.89
9	14	1.4	1.8e+03	0.6	0.1	26	44	377	395	374	402	0.87
10	14	1	1.3e+03	1.0	0.2	26	48	404	430	397	435	0.81
11	14	2.2	2.7e+03	-0.0	0.1	24	48	430	453	424	459	0.84
12	14	2	2.5e+03	0.1	0.1	27	46	461	480	452	486	0.85
13	14	0.29	3.6e+02	2.8	0.1	23	48	485	510	480	514	0.87
14	14	0.39	4.9e+02	2.4	0.6	26	44	515	533	509	538	0.78

Sequence Information

Coding Sequence: ATGAACTTAGAAAgacaaaaGTGCCAACAAACAACTAAATCTGGAATTCCCAATGAATGCAAACTGAACACTCACGTCCTTCTACGAACACTGCTGTCACACACCGGCGAGAATCCGCTCGAAACCCAAAATCGCGACAATTTGAAACTTCACGTCGATGAGAAACCATTCGGTTGCGACCTTTGCAAATTCAGATGCCGAAAATCATCAAacttgaagcagcacaagttaacACATACCGGCGAAGAGCCGTTCCGTTGCAATCTATGCGAGCACAAGTACCTACGCGGCAGTAGCTTAAGAAagcacatgttaatacacaccggcgagcaaccgttcagttgtaatcATTGCCAGGCTAAATTCAGAAACTCCAGGGCTTTGAAGCGACATACGCTGGGACACACCGACGGTGAGAAGCCACTGAGTTGTCATATTTGTGATTACGTCAGCCTACGACCGCAACACCTAAAGGTGTatagttgtgacctttgcgcgTACAAGTGCTGCCAACCTGCTGTATTAAAGAAGCATATGTTAAAACACACCGGTGAAAAATACTTGAAATGTAATATCTGCCGATTGGAATTTAGCCAGAGCAGATACTTAAGGGCGCATTTATTGACGCATGCCGACGTGAGAACATTCAAATGCAGCCATTGCGGTTACACAACCAAAACACCTCAGGAATTGGAAGCGCACGTCTCAGTCCACGCGGTTGAAAAACCGTTCAAGTGTAACCTCTGCAACTACGCGGGGAAAAAACCGAGCTATTTGAGGCAACACATATGGCAACAGACAACCAAGTCAGGAATCGGCGAGAAACCGGTCGCCTGTGACATTTGTGATTTCAAAACCCGCAAGCGCTGCAATTTGAAGCGGCACATGCTGATACACACCGATGCGAAGCCGTACGGCTGCGATCTTTGCGACTTCACGTGTCGAACTTCGACGAATCTGAGGCGGCACAAGTTCTCGCACATCGACGAAAAGCCGTTCCGTTGCAACCTATGCGAACACAAATACCTAAACGTCAAGAGCCTAAACAAGCACATGTTGACACACACACCGACCAAAATTCGTACAGGTCGGCACATGTTGACACACACCGGCGGCGGGAAGTTATTCAGCTGTCACATCTGCGATTACGTGGGCCTACAGTCGCAATACTTGAGCATGCACATGTTAGCGCACGCCCCCAAAGAgtacagttgtgatctttgcgagtACAAGTGCCGTCAACCTGATAAACTGAAGGAACATATGATGCTACACAGTGGTGAAAGACACTTCAAGTGCAATTTCTGCGGTTCGGAATTTAGTCAGGATAAGTATTTAAAGGCGCACTTATTAAGGCACGCCGACGTGAAGGCGTTCAAGTGCGGCCAGTGTGAGTATCAAACCAGGACGTCTCAGGATTTGAGGGGGCACATGGCGGTGCATTCAGTCGAAAATTCGTTCAAGTGTAAGCTTTGCAAATATACAGGGAAATCTGCAAGATATTTGAGGCAACACATGTTGGTGAAACACGAGAAATTGCTGAAGTGTAACGTTTGTGGGTACGCCTGTGGACTGTCGAGGCATTTGAAGAGGCACATGGCGAAACATGCCGGCGAGAATCCCCCCTAg
Protein Sequence: MNLERQKCQQTTKSGIPNECKLNTHVLLRTLLSHTGENPLETQNRDNLKLHVDEKPFGCDLCKFRCRKSSNLKQHKLTHTGEEPFRCNLCEHKYLRGSSLRKHMLIHTGEQPFSCNHCQAKFRNSRALKRHTLGHTDGEKPLSCHICDYVSLRPQHLKVYSCDLCAYKCCQPAVLKKHMLKHTGEKYLKCNICRLEFSQSRYLRAHLLTHADVRTFKCSHCGYTTKTPQELEAHVSVHAVEKPFKCNLCNYAGKKPSYLRQHIWQQTTKSGIGEKPVACDICDFKTRKRCNLKRHMLIHTDAKPYGCDLCDFTCRTSTNLRRHKFSHIDEKPFRCNLCEHKYLNVKSLNKHMLTHTPTKIRTGRHMLTHTGGGKLFSCHICDYVGLQSQYLSMHMLAHAPKEYSCDLCEYKCRQPDKLKEHMMLHSGERHFKCNFCGSEFSQDKYLKAHLLRHADVKAFKCGQCEYQTRTSQDLRGHMAVHSVENSFKCKLCKYTGKSARYLRQHMLVKHEKLLKCNVCGYACGLSRHLKRHMAKHAGENPP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466709;
90% Identity: iTF_00466709;
80% Identity: iTF_00466709;