Dpar001101.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:8457013-8457456[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.00039 0.49 12.0 0.0 21 44 5 28 2 36 0.86 2 5 0.06 75 5.0 0.1 21 43 33 55 28 61 0.76 3 5 0.0011 1.4 10.5 0.3 21 47 61 86 58 90 0.89 4 5 0.02 25 6.5 0.0 21 44 90 113 86 117 0.91 5 5 0.016 20 6.8 0.2 21 44 118 141 114 145 0.90
Sequence Information
- Coding Sequence
- ATGACACAcgccgacgagaagccgttcggttgtgaccTCTGCGACGACAAGTTCCGACAGAAAAGAGATATGAAAAGGCACAGGTTGAttcacaccggcgagaagccgttcaccTGTAAATTTTGCGACTACAAGTGCGTGCGGAACACGAACATGAAGGCTCACGAAttgatacacaccggcgagaagccgttcgctTGTGGAATGTGCAGATACAAGTGCCGACACTCCACGAGCTTGAAACGGCACATGCTGAAACACGCGGGCGGCGAGAAGCCGCTtagttgtgatttttgcgattacaagtgccgatTCTCTGCGGACATGAAACGACACGTCTACacgcacaccggcgaaaaaccgatcggttgtgatctttgcagtTACAAATGTCGACAACCCACAAGTTTGAAGCACCACATGCGCAAACATACCGACGAGTAG
- Protein Sequence
- MTHADEKPFGCDLCDDKFRQKRDMKRHRLIHTGEKPFTCKFCDYKCVRNTNMKAHELIHTGEKPFACGMCRYKCRHSTSLKRHMLKHAGGEKPLSCDFCDYKCRFSADMKRHVYTHTGEKPIGCDLCSYKCRQPTSLKHHMRKHTDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466986;
- 90% Identity
- iTF_00466986;
- 80% Identity
- iTF_00466986;