Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:3546688-3548398[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00023 0.3 12.7 0.1 21 46 44 69 37 74 0.91

2 13 0.0056 7.1 8.3 0.2 21 44 129 152 125 161 0.87

3 13 0.68 8.6e+02 1.6 0.2 22 44 158 180 153 184 0.77

4 13 0.091 1.1e+02 4.4 0.2 21 43 185 207 182 213 0.89

5 13 0.13 1.6e+02 4.0 0.1 21 43 213 235 208 240 0.87

6 13 0.0098 12 7.5 0.5 13 43 233 263 227 268 0.88

7 13 0.21 2.6e+02 3.2 0.0 21 44 269 292 264 296 0.78

8 13 0.012 15 7.3 0.1 21 48 297 323 294 326 0.90

9 13 0.04 50 5.6 0.0 18 43 322 347 320 354 0.87

10 13 0.12 1.5e+02 4.0 0.2 21 48 353 379 349 385 0.84

11 13 0.024 30 6.3 0.1 20 43 408 431 393 436 0.78

12 13 0.016 20 6.9 0.1 21 43 437 459 432 465 0.87

13 13 0.13 1.6e+02 3.9 0.3 20 43 464 487 460 497 0.84

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00023	0.3	12.7	0.1	21	46	44	69	37	74	0.91
2	13	0.0056	7.1	8.3	0.2	21	44	129	152	125	161	0.87
3	13	0.68	8.6e+02	1.6	0.2	22	44	158	180	153	184	0.77
4	13	0.091	1.1e+02	4.4	0.2	21	43	185	207	182	213	0.89
5	13	0.13	1.6e+02	4.0	0.1	21	43	213	235	208	240	0.87
6	13	0.0098	12	7.5	0.5	13	43	233	263	227	268	0.88
7	13	0.21	2.6e+02	3.2	0.0	21	44	269	292	264	296	0.78
8	13	0.012	15	7.3	0.1	21	48	297	323	294	326	0.90
9	13	0.04	50	5.6	0.0	18	43	322	347	320	354	0.87
10	13	0.12	1.5e+02	4.0	0.2	21	48	353	379	349	385	0.84
11	13	0.024	30	6.3	0.1	20	43	408	431	393	436	0.78
12	13	0.016	20	6.9	0.1	21	43	437	459	432	465	0.87
13	13	0.13	1.6e+02	3.9	0.3	20	43	464	487	460	497	0.84

Sequence Information

Coding Sequence: ATGGCCTTGGAAAATAAATTCGAAGAACGCCAATGGACATCCAAATATAAAATCGTGGACGAAACAACATTGGAACGTCAAGAATTTGATTCCAAACTTGAAATCCAAAGATGTTTAGAAGAGCACCCCAGCGAAAAGCCTTTTCGTTGCGCTGTTTGCGACTATAAATTTCGACAATCTGGGGACTTGGAACGTCACATGTCGATACACACCAAAGAGAAGCTGTTTAGTTGCGAGtcctgcgattacaaatgccgagaTAAATGTTACTTGAAGCTACATAATATGTACAaacacacgggcgagaagcgattttgttgtaagaTTTGCGGTTACAAATGCCAAGAGAAGAAATCTTTAAAGACGCACATATTAACACACACCGGAGAAAGACCATTCAGTTGCGAGCTTTGCGATTGCAAGTTCCGACAAAAACAAGCTCTAAAGCGACATAATTACACGCATACAAATCAGAAGCcttttagttgtgatctttgcgattacaaatgcatAGAGAAGGAAACCTTGCGACGtcacatgttaacgcacacgGGAGAGAAACCgctcagttgcgatctttgcgattacaaatgttgCCAGGCCGGAAACTTGGCGAGACATAGGTTAACACACACCGGGGAGAAGCCTTTTGCTTGCGACCTTTGCGGTTACAAATGCCGAGAATCCGGATCTTTGAAAAAGCACaggttaaagcacaccgacgagaagccttTCGCCTGCGACCTTTGCAGTTACAAGTGTCGAGAATCCAGAAGATTTAAACAACACAGGTTGACacataccggtgagaagccgttcagttgtgacctttgcgattacaaaagCATAGAGAATGAAAAATTGCGACGtcacatgttaacgcacacgGGAGAAAAACcgctcagttgtgatctttgcgattacaaatgtagCCAGGCCGGAAACTTGGCGAGACACAAGTTAagacacaccggcgagaagcctttcGCTTGCAACCTTTGCAGTTACAAATGCCGAGACTCCGGATCTTTGAAAAAGCACgggttaaagcacaccgacgagaagccttTCGCATGTGATCTTTGCAGTTACAAGTGTCGAGAATCCGGAAGATTGAAACAACACAGGCTGACACATACCGGTAAGAAGCCGCTcagttgtgatttttgcgattacAAAAGCGTAGAGAAGGAAAAGTTGCGAAGtcacatgttaacgcacacgGGAGAGAAACcgctcagttgtgatctttgcgattacaagtgtaGCCAGGCCGGAAACTTGGCGAGACACAGGTtaacacacaccggcgagaagcctttcGCTTGCGACCTTTGCAGTTACAAATGCCGGGACTCCGGATCTTTGAAGAGGCACaggttaaagcacaccgacgagaagccttTCGCCtgcgatctttgcagttacaaGTGTCGAGAATCCGGAAGATTGAAACAACACAGGTTGAcacacaccggtgagaagccgtacagttgtgatctttgcgattacaaatgctgGAGGCGCGAGTATTTCATGAAACATAGGTCAACGCACAGTCAGTCGTATGAATCGAAAACGGATTAA
Protein Sequence: MALENKFEERQWTSKYKIVDETTLERQEFDSKLEIQRCLEEHPSEKPFRCAVCDYKFRQSGDLERHMSIHTKEKLFSCESCDYKCRDKCYLKLHNMYKHTGEKRFCCKICGYKCQEKKSLKTHILTHTGERPFSCELCDCKFRQKQALKRHNYTHTNQKPFSCDLCDYKCIEKETLRRHMLTHTGEKPLSCDLCDYKCCQAGNLARHRLTHTGEKPFACDLCGYKCRESGSLKKHRLKHTDEKPFACDLCSYKCRESRRFKQHRLTHTGEKPFSCDLCDYKSIENEKLRRHMLTHTGEKPLSCDLCDYKCSQAGNLARHKLRHTGEKPFACNLCSYKCRDSGSLKKHGLKHTDEKPFACDLCSYKCRESGRLKQHRLTHTGKKPLSCDFCDYKSVEKEKLRSHMLTHTGEKPLSCDLCDYKCSQAGNLARHRLTHTGEKPFACDLCSYKCRDSGSLKRHRLKHTDEKPFACDLCSYKCRESGRLKQHRLTHTGEKPYSCDLCDYKCWRREYFMKHRSTHSQSYESKTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466719;
90% Identity: iTF_00466719;
80% Identity: iTF_00466719;