Dpar001062.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:8145721-8149501[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.03 38 6.0 0.2 21 44 8 31 4 39 0.87 2 23 0.069 86 4.8 0.1 21 50 36 64 33 68 0.84 3 23 0.018 23 6.7 0.2 21 44 64 87 61 91 0.90 4 23 0.014 17 7.0 0.1 21 43 92 114 89 120 0.90 5 23 0.024 30 6.3 0.0 21 44 120 143 117 151 0.87 6 23 1.3 1.7e+03 0.7 0.1 21 43 148 170 145 175 0.88 7 23 0.62 7.7e+02 1.8 0.0 22 48 205 231 201 237 0.85 8 23 0.28 3.6e+02 2.8 0.0 22 44 263 285 258 295 0.81 9 23 5.2 6.5e+03 -1.2 0.1 21 44 318 341 305 351 0.83 10 23 4.2 5.3e+03 -0.9 0.3 20 46 373 399 358 403 0.78 11 23 3.1 3.9e+03 -0.5 0.1 26 48 407 428 400 432 0.79 12 23 0.0012 1.5 10.5 0.6 21 50 461 490 454 491 0.91 13 23 0.0091 11 7.6 0.1 21 45 485 509 484 516 0.85 14 23 0.44 5.5e+02 2.2 0.1 21 44 513 536 510 540 0.90 15 23 0.0059 7.5 8.2 0.1 21 44 541 564 537 568 0.90 16 23 0.47 5.9e+02 2.1 0.0 21 44 569 592 566 597 0.89 17 23 0.0035 4.3 9.0 0.3 21 48 597 623 594 627 0.88 18 23 0.31 3.8e+02 2.7 1.1 24 48 628 651 624 653 0.89 19 23 0.0036 4.5 8.9 0.4 18 47 650 679 649 685 0.85 20 23 0.19 2.4e+02 3.4 0.2 21 44 681 704 679 708 0.90 21 23 0.022 28 6.4 0.1 21 44 709 732 705 741 0.87 22 23 3 3.8e+03 -0.5 0.1 21 44 737 760 734 764 0.83 23 23 0.0068 8.5 8.0 0.0 21 44 765 788 761 795 0.89
Sequence Information
- Coding Sequence
- ATGAATATTGCGACCCACTCAGGCGAGAGACCGTTTACTTGCGAATTTTGCGGTTGCAAATACCTACACGCCCGGCGCCTAAAGCGGCACATGCtaacacacaccgacgagaaaccatTCGGTTGTAGCTCCTGCGACTTTCGCTGCAAGCAAAAGCAAAACTTAACGCAGCACTTACTGACGCACACCGCCGAGAAGCCCTTCGCCTGTAAACTTTGCGATTACAGATGCGGCCACTCCAGAGATCTGAAACGGCACGTCttaatacacaccgacgagaagccctTCCGTTGCACTTTCTGCGGCTACAAGTGCCGACAATCCGAGAATTTGAAGATGCACGCTCTgacacacaccgacgagaaaccgttcggcTGTAagctttgcgattataagtgccgacaaAACGGAACGCTAAAGCGTCACATGTTGACTCACACGGGCGAAAAGCCCTTCGGCtgcgacctttgcgattacaaatgccgacgaATCGAAGTCCTGAAGCGACACGCGTTGATTCACACCGATGAGAAACTTTTCAGTTGCGATCTCTGCCAGTTCGAATGCCGACGGCCCGAACGGTTGGACGAGCACGTGTTAACGCACGGCGAGGAGAAACCGATCGgctgcgatctttgcgattacaagtgccgacAAGCGGGAAGCTACCAGCGGAAAACTGAATATCAACGTGTGACAAACACCGGCGGCGAAAACCCGCACGTGTTAAGACACACCAACGAGAAGCCTTTCTGTTGTAATACGGCGATTATAAATGCGAACAAGGAGAAGCGTTTCCGTTGTACCTTGTGCGATTACAAAAGCCAACAATCCGGAAACCTGAAGCAgcacatgttaacacacacCGAGGAGAAGCCCTTCGCTTGCGCATTCTGTAATTACCAATACCTGCGAGCGCCCAGTTTGAAACGGTACATGCTAACGCACACCAATGAGAAGCCCTTCGGGTGTATGCTCTGCGATTACCAGTGCTCACAAGCACCAAGTTTGAAACTCCACATGTTAACACACACGGGCGAGAAACCGTACAGTTGCGACCGTTGCGAATACAAGTGCGCTCACGTCGGAAACATGAAGCAGCACAGGTTGACACACGACGGCGAGAGGCACTACAAATGTAATATATGCGAGTACAAGCGCAGACGAAGGGAATACTTAAAGAAACATGTCTTGTTGCACACCGACGAGATATCATTTAAGTGCGGCCGTTGTGGATACGCAACCAGGACAAGTTACTCATTGAAAAGGCACGAACTGGTACATTCTCTGACGAAAAGCCGTTCAGATGTAGTCTCTGCAAGTACGCAGCTAAATATTCGATACCAGTGGAATATTAATTATCAACGTGTGACACACCTCGACGAGAAGCCCTTCTGTTGTACTTTGTGCGATTACAAATGCAATCAATCGGGAATCTTGAGGCGACACACCAGCGAGAAACACTTCAGCTGTACCTTGTGCGATTACAAATGCAAGCAGTCCGGAAACATGAAACGAcacatgttaacgcacaccAACGAGAAGCCCTTCGGTTGTGTGctctgcgattacaagtgcTCGCAAGCGCTGAGCTTAAAACGgcacatgttaacacacacCAGCGAGAAACACTTCAGCTGTACCGTGTGCGATTACAAATGCAAGCAGTCTGGAAACATGAAACGAcacatgttaacgcacaccgacgagaagccctTCGGTTGTGTActctgcgattacaagtgcTCGCAAGCGCTAAGCCTAAAACggcacatgttaacgcacaccAACGAGAAGCCCCTAAGTTGCACTTTCTGCGACTACAAATGCCGACAACCCGAAAATTTGAGGGCGCACATATTGAAACACACCGGCAAATATCCGTTCTgctgtaatctttgcgattacaaatgccgttATAACGGCGCATTGAGGCGTCACATGTTAAGACATACAGATGAGAAACCTGTCAGTTGTgaactttgcgattacaagtgcagACAAAAGGAATACCTGAAGAGGCACATGTtgatacacaccgacgagaaaccttacagttgcgatctttgcgattgcAAGTGCCGACGATCGGATGAATTGGATCagcacatgttaacgcacaGCGGCGAGAAGCCGATTGGCTGTAGCctgtgcgattataaatgccggcagaTCGGAACGTTGAAGCGTCACATGTTAACGCATACAGAAGAGAAGCccttcagttgtgacctttgcgattacaaatgccgaagGCACGATATCCtgaaacagcacatgttaaCTCACACTGGTGAGAAACCTTTTAGTTGTAATATTTGCGATTACAAAGGCAGACTATCCAGACATTTGAAGAAACACATGTTAACACACGGTGGCAAGAAGCAATTATAA
- Protein Sequence
- MNIATHSGERPFTCEFCGCKYLHARRLKRHMLTHTDEKPFGCSSCDFRCKQKQNLTQHLLTHTAEKPFACKLCDYRCGHSRDLKRHVLIHTDEKPFRCTFCGYKCRQSENLKMHALTHTDEKPFGCKLCDYKCRQNGTLKRHMLTHTGEKPFGCDLCDYKCRRIEVLKRHALIHTDEKLFSCDLCQFECRRPERLDEHVLTHGEEKPIGCDLCDYKCRQAGSYQRKTEYQRVTNTGGENPHVLRHTNEKPFCCNTAIINANKEKRFRCTLCDYKSQQSGNLKQHMLTHTEEKPFACAFCNYQYLRAPSLKRYMLTHTNEKPFGCMLCDYQCSQAPSLKLHMLTHTGEKPYSCDRCEYKCAHVGNMKQHRLTHDGERHYKCNICEYKRRRREYLKKHVLLHTDEISFKCGRCGYATRTSYSLKRHELVHSLTKSRSDVVSASTQLNIRYQWNINYQRVTHLDEKPFCCTLCDYKCNQSGILRRHTSEKHFSCTLCDYKCKQSGNMKRHMLTHTNEKPFGCVLCDYKCSQALSLKRHMLTHTSEKHFSCTVCDYKCKQSGNMKRHMLTHTDEKPFGCVLCDYKCSQALSLKRHMLTHTNEKPLSCTFCDYKCRQPENLRAHILKHTGKYPFCCNLCDYKCRYNGALRRHMLRHTDEKPVSCELCDYKCRQKEYLKRHMLIHTDEKPYSCDLCDCKCRRSDELDQHMLTHSGEKPIGCSLCDYKCRQIGTLKRHMLTHTEEKPFSCDLCDYKCRRHDILKQHMLTHTGEKPFSCNICDYKGRLSRHLKKHMLTHGGKKQL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466637;
- 90% Identity
- iTF_00466637;
- 80% Identity
- iTF_00466637;