Dpar001129.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:8717358-8718644[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 1.7e+02 3.9 0.1 23 44 36 57 31 61 0.85 2 13 0.0019 2.4 9.8 0.1 21 44 62 85 58 93 0.88 3 13 0.048 60 5.3 0.2 22 44 91 113 87 118 0.89 4 13 0.00056 0.71 11.5 0.0 21 48 119 145 116 150 0.87 5 13 0.019 23 6.6 0.1 22 44 148 170 144 174 0.89 6 13 0.25 3.2e+02 3.0 0.0 21 44 175 198 172 202 0.89 7 13 0.031 39 5.9 0.1 21 44 203 226 199 231 0.90 8 13 0.0075 9.4 7.9 0.2 21 48 232 258 228 261 0.90 9 13 0.21 2.7e+02 3.2 0.1 18 44 257 283 256 290 0.85 10 13 1.3 1.6e+03 0.8 0.2 26 44 293 311 285 315 0.89 11 13 0.14 1.7e+02 3.8 0.1 25 45 320 340 314 346 0.86 12 13 0.021 26 6.5 0.5 17 44 369 396 356 401 0.81 13 13 7.8e-05 0.098 14.2 0.4 21 48 401 427 397 428 0.91
Sequence Information
- Coding Sequence
- ATGCTGAGACACACCGGCGAAAAGCTATTCCGATGTGTCGTCTGCGATTATAAATTTCAAGACATCGAAAAACTGAAGCGGCACGTGACGACGCACGTCGGAGAGAAGAAATTCGGCTGCGAGCTTTGCGACTACAAATGCCGACAGTCGTTATTACTGAAGCGGCACGTGTTGAcccacaccggcgagaaaccgttcaattGTGACCTGTGCGATTACAGATGCCGACAACCCGGAAATCTCAAGCGGCACGTGCTGACTCATACCGACGACAAACCGTTCGTCTGCGACCTCTGCGATTACAGATGCCGACAGACTGAACTATTGAAGcggcacatgttaatacacactggcggcgagaaaccgttcagttgtactttctgcgattacaagtgccgaaAGTCTGGGAATTTGAAGCGACACATGTTGAAACACACCGACGacaagccgttcagttgtgacgtttgcgattacaaatgccgacagctcgcgaatttgaaacagcacatgctGACGCACACCGAAGAGAAACCGTTAAGTTGTgacctctgcgattataaatgccggcaagTCGGAAAATTGAAACTGCACATGCTAActcacaccgacgagaagccctTCAGCTGCGATCTCTGTGACTATAAAAGTCGACAACGCGCGGTTCTTAAACGGCACATGTTGATACACACGGGCGGCGAGAAaccatttaattgtaatttttgtgATTACAGGTGCCTGCAGGCCGTGAACTTGAAGCGTCACATGTTgaggcacaccggcgagaagccttttagttgcgacctttgcgattataaatgtcggcaGTTCATATCTTTAAAACTGCACATGCTAGCACACACCGACAAGAAACTGTTCAcgtgcgatctttgcgattacaagtgccgaaCGGCCGAGTTACTGAAACGGCACATCTTAActcacaccgacgagaaactgttcagttgtggtctttgcgattttaaaagTCGACAACTTGCGGCGTTGAGGCGGCACATGACGGCGCACGCGGAGGCCGAGAAAACATTCAGCTGTAATTTGTGCGATTACAAGAGCCAGTGGCCCACTGATGTAAAGCGTCACGTGTTGaggcacaccggcgaaaagccggtcagttgtgatctttgcagcTACAAGTGCGTGCAACCGTCACAACTGAAGCGgcacatgttaacacacaccgacgagaagccattCTGCTGTGACATTTGCGATTACAGATTCCGAAGTTCCAGCAACTTGAAACGTCACATGTTAAGACACCGTTaa
- Protein Sequence
- MLRHTGEKLFRCVVCDYKFQDIEKLKRHVTTHVGEKKFGCELCDYKCRQSLLLKRHVLTHTGEKPFNCDLCDYRCRQPGNLKRHVLTHTDDKPFVCDLCDYRCRQTELLKRHMLIHTGGEKPFSCTFCDYKCRKSGNLKRHMLKHTDDKPFSCDVCDYKCRQLANLKQHMLTHTEEKPLSCDLCDYKCRQVGKLKLHMLTHTDEKPFSCDLCDYKSRQRAVLKRHMLIHTGGEKPFNCNFCDYRCLQAVNLKRHMLRHTGEKPFSCDLCDYKCRQFISLKLHMLAHTDKKLFTCDLCDYKCRTAELLKRHILTHTDEKLFSCGLCDFKSRQLAALRRHMTAHAEAEKTFSCNLCDYKSQWPTDVKRHVLRHTGEKPVSCDLCSYKCVQPSQLKRHMLTHTDEKPFCCDICDYRFRSSSNLKRHMLRHR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466641;
- 90% Identity
- iTF_00466641;
- 80% Identity
- iTF_00466641;