Dpar001068.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:8185085-8187223[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.001 1.3 10.7 0.0 21 44 6 29 4 33 0.91 2 15 0.019 23 6.6 0.1 21 49 34 61 30 65 0.88 3 15 0.069 87 4.8 0.2 18 44 59 85 58 93 0.88 4 15 0.72 9.1e+02 1.5 0.3 25 48 94 116 89 121 0.83 5 15 0.43 5.4e+02 2.3 0.1 20 47 117 144 114 149 0.83 6 15 0.02 26 6.5 0.2 17 44 141 169 123 179 0.80 7 15 0.5 6.3e+02 2.0 0.1 20 44 183 207 174 212 0.86 8 15 0.00086 1.1 10.9 0.0 21 51 240 270 236 271 0.87 9 15 0.17 2.1e+02 3.6 0.1 21 44 268 291 266 296 0.89 10 15 0.0064 8 8.1 0.1 21 48 296 322 293 324 0.91 11 15 0.037 46 5.7 1.0 21 45 324 348 321 355 0.88 12 15 0.025 31 6.2 0.1 13 44 356 387 350 395 0.84 13 15 0.0099 12 7.5 0.0 21 46 392 417 389 421 0.91 14 15 0.012 15 7.2 0.6 22 47 422 446 418 449 0.88 15 15 0.24 3e+02 3.1 0.8 21 44 450 473 446 478 0.80
Sequence Information
- Coding Sequence
- ATGCTggtacacaccggcgagaagccgtcaACCTGCGAGTTTTGCGATTACAAAAGCCGACTGGCCCGAAACTTGAAGCAACACATGCTAACGCATTccgacgagaagccgtacaCTTGTAACGATTGCGGCTTCAAATGTCGACACCGCGGAAACCTCAAGCAACACATGTTAagacacaccggcgagaagccgtacaTTTGCGACCTTTGCGGCTACAAATGCCAACAGGGCACGAGTTTAAGACAGCACATGCTGATACATACCGGCGAAAAGCAATACGAGTGCAGTCTTTGCGGTTATAAATGCAATCGGTCGGGAAATTTGAAGATACATTTGTTAAGGCATTCCAACGATAGGCCGTTTAAGTGCGGACGTTGCGAGCACGTAAGCAAGACGGCGGGAAACTTAAAAATACACATGCGAGTGCATTCCGATGAGAAACCGTTCAGGTGCAACGTCTGCGATTACGCGACCAAATGGTCGTCGCACTTGAAGAGGCACATGATGTCGCACGAGGAACTGCTCAGATTTCGATGGCACCCTAAACCTGAAAGTCCCTTCAAATGCCACACGTGCGGTACCATGTATAAGTCTTACACCCGCATGCGCCGTCACATGCTGACACACACCAACGAGACGGAATTCAACTGCGACTTTTGCGCTTACAAGAACCGCCAGTTCGGAAAGATCCAGAGCCACATGTtgacgcacaccggcgagaagccgtttggctgtgatctctgcgattataaatgcagggAATCCGGAAAGTTGAGGCGGCACATGTTGttgcacaccggcgagaagccgttcagttgtgacgtctgcgattacaagtgccgacAACCCGGAAGGTTGAAGGAGCACATGTtgacgcacaccggcgagaagccgttcggttgcgatctctgcgattataagtgcAGAGAGAGCGGAAAGTTGAAGCGGCACAACTTAAGGCACATccgcgagaagccgttcagctgcGATTTTTGCGAATATAAATGCCACCAACCCGTAACGTTAagacgccatctattgatacACAGCGGGCAAAAATCGGAGAAGGGGGCGAAACAGGTTAGTTGTGAGAAACCGTTTGGTTGTGATTTATGCGATTATAGGAGTCGAGAGGCTGCAAAAttgaaacggcacatgttaacgcacacgggcgagaagccgttcagttgtacTCTTTGCGACTATAAGTGTCGACAATCCGGGAGGTTGAAGGAGCACATGTTCTTGCACATCGGTGGCGAAAAGCCGTTAAGTTGTGACGTTTGCAGTTACAGGTGCCGACAGCCCGCTATGTTGAAAAGGCACATGTTAACGCACTACGGCAGCGAGAAGCCCCTCGGCTGCGAGATCTGCGATTACAGATGTTGTCATCCTTCAACTTTAAAACGGCACGTgttgaagcacaccggcgaAAGACGCTAG
- Protein Sequence
- MLVHTGEKPSTCEFCDYKSRLARNLKQHMLTHSDEKPYTCNDCGFKCRHRGNLKQHMLRHTGEKPYICDLCGYKCQQGTSLRQHMLIHTGEKQYECSLCGYKCNRSGNLKIHLLRHSNDRPFKCGRCEHVSKTAGNLKIHMRVHSDEKPFRCNVCDYATKWSSHLKRHMMSHEELLRFRWHPKPESPFKCHTCGTMYKSYTRMRRHMLTHTNETEFNCDFCAYKNRQFGKIQSHMLTHTGEKPFGCDLCDYKCRESGKLRRHMLLHTGEKPFSCDVCDYKCRQPGRLKEHMLTHTGEKPFGCDLCDYKCRESGKLKRHNLRHIREKPFSCDFCEYKCHQPVTLRRHLLIHSGQKSEKGAKQVSCEKPFGCDLCDYRSREAAKLKRHMLTHTGEKPFSCTLCDYKCRQSGRLKEHMFLHIGGEKPLSCDVCSYRCRQPAMLKRHMLTHYGSEKPLGCEICDYRCCHPSTLKRHVLKHTGERR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466684;
- 90% Identity
- iTF_00466684;
- 80% Identity
- iTF_00466684;