Dpar000622.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:3616035-3617216[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.046 58 5.3 0.0 21 48 25 51 22 53 0.91 2 12 0.18 2.3e+02 3.4 0.8 18 45 50 77 49 82 0.82 3 12 0.84 1.1e+03 1.3 1.4 22 44 82 104 77 109 0.84 4 12 0.036 45 5.7 0.1 21 44 109 132 105 142 0.88 5 12 0.12 1.5e+02 4.1 0.3 21 43 165 187 161 192 0.89 6 12 8.1e-06 0.01 17.4 0.0 9 44 181 216 177 222 0.87 7 12 0.087 1.1e+02 4.5 0.0 21 43 221 243 218 249 0.90 8 12 0.00086 1.1 10.9 0.1 21 44 249 272 244 276 0.90 9 12 0.097 1.2e+02 4.3 0.1 21 43 277 299 273 306 0.89 10 12 0.27 3.4e+02 2.9 0.1 26 43 310 327 300 332 0.87 11 12 0.029 36 6.0 0.0 21 48 333 359 328 361 0.90 12 12 0.0073 9.2 7.9 0.8 16 43 356 383 353 392 0.89
Sequence Information
- Coding Sequence
- ATGGAGAAGAGAAGTAGTAGTTCCGAATTTAAAACTCGAGGACGTCTGGAAGAACACGCGCTGACACACGctgacgagaagccgtttagaTGCGTCGTCTGCGATTATATATTTCAACAGCCCGACGACCTGAAAACGCACATGCTAAGACACACCGGCGAGAACCCTTTTCACTGCGACATTTGCAACTGCAAATTTCGACTTAAAAGTCATTTGACGCAACACATGCGCAGACACACGCGCGAGGAACGGTTTTGTTGCAACATTTGCAATCACAAGTGCTCTGACGCGAGAGCCTTGAAGAGCCACCTGTTAtcacacaccggcgagaaacccttcagctgtgacctttgcgattacaaatccCGACAGAAACAATCTCTAACGCGACATAAATACACGCATACGGGCCACAAGCCGTTCtcttgcgatctttgcgattacaaatcgACAAACAAGACCATGTTGGACCGTCACGTGTTCACGCACACCGGAGAAAAACCGTACAGCTGTGacgtttgcgattataaatgccgacagcccGCGTATTTGAAAAAGCACAGGCTGACTCACACCAGCGAGAGGCCTTTCACCTGCGACATTTGTGGTTTTAAATTTCGGTTCGGCACAAACCTGAAGCGccacatgttaacgcacaccggcgagaagccctTCGCTTGCGATCTTTGCGGTTACAAGTGCCGAAATGGCGAGAACCTGAAGCAACACAGGTTAACGCACACGGACGAGAGGCCTTTCGCTTGCGACATttgtcagtttaaatttcggCTGGCCACAAACTTGAAGCggcacatgttaacgcacaccgacgagaagccgttcgcttgcgatctttgcgattacaagtgtcgaATTTCCGGAAACATGAAGCAGCACAGATTGACGCACACGGGCGAGATGCTTTTCGCCTGCGACCTTTGCGATTTCAAGAGCCGACAGGCCACGAACCTGAAGCAGCACAGGTTAATACATACGGGCGAGAAGCCTTTCGCTTGCGATCTTTGCGGTGTTAGATTTCGATTCGCCGGAAACTTGAAGCAGCACAGGTTAAGGCATAGCGGCGAGAAGCCTTTCGCTTGCGACCTTTGCAGTTACAGGTGTCGAGGATCCGGACAGTTGAAACGACACAGGCTGGGacataccggtgagaagccTGTTTGA
- Protein Sequence
- MEKRSSSSEFKTRGRLEEHALTHADEKPFRCVVCDYIFQQPDDLKTHMLRHTGENPFHCDICNCKFRLKSHLTQHMRRHTREERFCCNICNHKCSDARALKSHLLSHTGEKPFSCDLCDYKSRQKQSLTRHKYTHTGHKPFSCDLCDYKSTNKTMLDRHVFTHTGEKPYSCDVCDYKCRQPAYLKKHRLTHTSERPFTCDICGFKFRFGTNLKRHMLTHTGEKPFACDLCGYKCRNGENLKQHRLTHTDERPFACDICQFKFRLATNLKRHMLTHTDEKPFACDLCDYKCRISGNMKQHRLTHTGEMLFACDLCDFKSRQATNLKQHRLIHTGEKPFACDLCGVRFRFAGNLKQHRLRHSGEKPFACDLCSYRCRGSGQLKRHRLGHTGEKPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00466669;
- 90% Identity
- iTF_00466669;
- 80% Identity
- iTF_00466669;