Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: Trerf1
Assembly: GCA_958336345.1
Location: OY284479.1:36912140-36947518[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 6 0.00055 0.05 15.5 0.1 2 23 215 236 214 236 0.97

2 6 1.5e-07 1.3e-05 26.7 1.4 1 23 242 264 242 264 0.99

3 6 0.00019 0.017 16.9 2.6 1 23 270 294 270 295 0.95

4 6 0.001 0.094 14.6 0.8 2 23 453 474 452 474 0.97

5 6 0.0032 0.29 13.1 0.0 1 23 1359 1383 1359 1383 0.97

6 6 6.4e-05 0.0059 18.4 0.7 1 23 1417 1439 1417 1439 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	6	0.00055	0.05	15.5	0.1	2	23	215	236	214	236	0.97
2	6	1.5e-07	1.3e-05	26.7	1.4	1	23	242	264	242	264	0.99
3	6	0.00019	0.017	16.9	2.6	1	23	270	294	270	295	0.95
4	6	0.001	0.094	14.6	0.8	2	23	453	474	452	474	0.97
5	6	0.0032	0.29	13.1	0.0	1	23	1359	1383	1359	1383	0.97
6	6	6.4e-05	0.0059	18.4	0.7	1	23	1417	1439	1417	1439	0.98

Sequence Information

Coding Sequence: ATGAAAGAGCGGCGAATTTTGAAGGGATTCGACGCCTGGGAATACTTAAAAGCAAACCGTGCAATTCCTGTTATCGTAAAAAGGCCTCTCTCGCAGCCGATAAATATTCCTCGAGGTGTTCATGAGCTGGCAGGCGTTCGGTTGCCCCTTCAACCCTATCCTGGAGCACACGCGGTGTTTATGTATAGCACCGCCGCTGATGGTAACGTAACACTCCAGTTGAAAGAGCCGGATGACCTGGACCGCTCGAGCTTGGCGGCCATGCTGGCCCGTCTTCAGGACGACGCTTCCTTTTCCATATCTTACCAGGACACCGATATTTTATCTGATGGTAGCATCGATGTCCTCTTAGGAACTGGAACCGGTAACGTCCAAGGCTCAAGTGGAAACGAAACAGTTACTGCGACCTTTGACCTGTTCGATTCGTCGAGCGGACCCGACCTCACGTTATCTCCGCAGACGTTCACGAATTCCGCAGAGGCTTTCATCAACGACAATTCCAACAGCCTGGGAGTTCCGGCGGATAATGACCCAGTCTCGTCTTCGGAAGACAAGAAAGTTCCCGTATCTACTGAGGTGGTGAAGCTGTCGGTGAAGAGGGCGCGGCCCAAGGCGGCGTCTCCAAACAGACAGGGGCCCCAACAGTGCCAGGTTTGCGCGAAGGTCTTCGGCAACGCGTCCGCGCTCGCGAAGCACAAGCTGACTCACAGCGACGAGAGGAAATATGTCTGCACGATGTGCGGCAAGGCCTTCAAGCGGCAGGACCACCTCAACGGTCATATGTTAACCCACAGAAATAAGAAGCCCTACGAGTGCAAGGCGGAGGGTTGCGGCAAGTCGTACTGCGACGCCAGGTCACTGAGGAGGCACACGGAGAACCACCACAGTTCATCGTCTGTTAACGCCTCTACCACCATGTCACCGGCTCAGGGGGCTGCTTCTGGAGACGCCGCCTCTCCTCATGGTTCAAGCTGTATTCAATACGCACCACCCCCGACGAGTACACCCGGTGGAAAAAGTCAGCTTCAACAACTGTTAGCAACAGAGCCCGCGAAGGGAGGCGGCGGGGGCAGCAACGACGGTTTAACGAAGCAGCAATTAGACTTAATTCACCAAATCATGGAGCAAACACAGCGACAATCACAATCAAGCTCGAAATCGAGCGCGAAGCCCAGCTCGAAGCCAGTCAGCAAAACACCAGTCAAAGTACAGCGAATCTGGAGCTCCGCCACGCAACAGAACACAGCGCCCAAGGCAAACGCAAGCGCCTCCAGTCCTCAGTCTAAGGTATCCAGCACGACCTCCTCCAGCACCACCAACAGCGCGAACGCCAGCAAAAATGAACCCAAGCCAGTGGAATGTAACCTGTGTCACCGGAAGTTTAAGAACATTCCTGCCCTCAACGGACACATGCGGCTACACGGTGGATACTTCAAAAagGACACAGATAACAAAAAGTGTGAAAAGAAAGACGCAAGCGGTCCACCTCTGCAAACGGCGAGCGTCAGCGTACGCGCCCTCATCGAAGAGAAAATCATCAACAAGCGCATAACCAACCCTCAGACTCCCACGTCGGAAGAGGTACCAAGGTCTTCGGCTCCACCCCTATTCCCACTTACAGTGCATTCCTCTGCGACCTCAAGCGATATCGATTCGAAGATAACTTCGTTCGTGGTGCCCGCACCGCCCCAGCACACTGCAGAAAAGGCTCGAAGACATTCCGACGCGGAGGCTTTTACAGTCCCCAGAACCCCCAGCACACAGCAGGAGGCCGAAGCCTTGGCAGACCTCATCCTCAAAAGGGAGAAAGTTTCCGTCAAACGAACTACCTCTGATCCCGGTCAGACTCAACAGCCGCAACAGCAGATCATCCAGTTCCAATCGGGAGACTCTTTCACCCTGACGGGGGTGACCTACCAATCGGAAGATGGGGATTACCTATCGCCCAGCATCCAAGACGAGGTTTTCACGCAGGTCCAAGACACGATGTTGCTGCAAAGCGTCGATGCCCAACAGCTATCATCGATTCAGTTCCAAACTGATGGTCTTCTGCAAGACCACGCCGATCAACATTTGCAGGACATCGTGCTTGAGGACTACTCCCACCTACAGGATAACGTAGTCCAATCACCTTCTTACCAGTCCAATCACTCAGTGAACCAAGAACTGCAAGCTGTTTTAGACTCGCCCTTACCGGAAAGCCTAGCGGAATTCAGCACGTTTCACTCGACCACCAACATCGACATGCCCTCCCCAGGATACCAAACCCAATCCCCCGCACAGTATTCAGGTTCCCCTCATACATCATTAACAGCGCAGAGCCCTTTGCAGTCACCCCTGATACGTCACGATTCTCCCGGATTTGCCTACCCAACACCTCCGGCGAGTCACGAGGGCCAAAGTCCTTGCTTCGGGCAAAACTCCATCCTCCCGATGGTCTCCCCCAAACAGAACGAGTACAACCAAATCGTCAACGACACCCCTCAAACTTCGTTACTGGCGGCTGATTTCTTCACCACCACCATGTCGAGCTCTGCGGCCGTCGAAGAAGCCCTTGAAGAAGTCCTCCCGGGTGAAAACATCGAAGCGGACGATTTATACCCGAGTTTAACCAACTCGCCCCCGCCACAATCACCGATTTCCGTTGGCCTAACCCCAGTTCCGTCCCCGCTCAGCAACATCCCAAACTCATCCGCCTCGTCGCCTCACCCCCAAAATAATAACTTCGCCACCTCGCAAACGGCCAGCATCCAGTTTCCTCACTACACCCTGCAATCGCATATGATGCCCAATTCCGACGACCCCCTACTCTCGAGTAGCCCCAAGGATTTCCAGGCGAAGAAAAGGTTCGAATTCAACGGCTTCCCCTTGAAGGTCATCAGCAGCAACGGCATATTGGACAGCGCGAATTTCGCGGGGATCCTTCTGGACTCGAACGGCGAGATCAAGCTCATACAGACCGGAGGGAATACGTTCCAGACGAAGAACATCGTGCTCACCACGGGGACCCCCATCGTGACGTCGCAGAGCGCCCCCAAGGAAGAGGATTCAAAAATGCAGAAGCAGTTCAAGATTTTTAAGGCGACTCAAATCCCCGCTAAGGTTCCCTCAAAACTGAAATACGCCGGAGTTGATGGGGGAGTGAAACAAGAGGAGACCAACGACGTATTTCTGAGCCCGACGACAGTACCTGCAAGTCCTGTGCGAGTTTCCAGGAAACGGCCTAGATCGGAACCCCTGCAGCTTCCGGTTTTACATCACTCGAGGCTGCGAGCTACCAGGAGCAAACCCCAGGGGGCGGCACCGTACACGCCTCTGCCGATCCTGAATCCGACGAGGCAGGGATCTGGTCTGTATTGGTCGCTGAAACAAAAAATGTGTAATGaaACCTTTGAGAATCAAGAGTCTGTCAACAACTGGAACAACGAATCAATCCCGGAGACCGATTCTACGCCCCATATAAACGTCGGCCCCCAGTTTCAGTGCGCGATTCCCTCTTTTATTCCAATCCACGGCAGGCGTAGCCAGGAGGCCAGCCGTGAGGACCTGTTATGGGACCCGGGTATAAGCGGCTCCTCGGATCTCGAAGTTGACATGTACTTGGATTTCGCGTGCTGCGCGGCGATCCCAGGCGGAGGAAGGAACAAGGAGTACGCCATGCACGTGCTGTACCTGTGCGGCGGAAACATACACGATGCTATGTTGAAGATTATGCAGCCGGCGCCCTCGCTTCCCTTCGGCAATCCGTTGCATCAGTATCAGTACAATGATAGCGATAAGTGGACGGCATCAGAAACGGAACTTTTCCATCATGCTTTGCTCAAATATGATAAAGACTTTACATATGTTGCTCAAGAGATTGGAAGCAAAACTGTGAAACAGTGCGTCCAGTTTTACTACGTGTGGAAGAAGGTCTGCGTAGATGAATACAGGCGTGTGAAACAAGGGCGCGATAGAAAGAACGGTTACAATAGGGGCGCTGACAGTGACCATGAAGAGAAGCCCCTTCCTGATGCCAGATTGCTTGGGATCGCCGATGCAGGGTCACCAATGCCGTTGCAGGACCATCGGAACTTCATCTGCGAGTTCGCGGATTGCTCGGCTAGCTTCAACTCAAGGGCGGCCTTAAACGGTCACATACGCATCCACGGTGGCACGGCTCGGAATTCCCCGACGAGATCGCAGGTGTCGGACAGACGCCCTCCGTCGGTAACACCCACCCTATGTCACTCTGAATCACCCGAAGACTACCCCTGTAAGATATGCGGGAAAgtctttacaaaaataaaaagccGCAGCGCCCACATGAAGTCCCATCGTCCCCCGGACGCAGAGCCCGCCAAGCGAAGAGACAAGGACGCTGCCTTTTCCTCCTCTAACTTCGATATCTCCGCGACAAGCCCTTTCAGCACTTAG
Protein Sequence: MKERRILKGFDAWEYLKANRAIPVIVKRPLSQPINIPRGVHELAGVRLPLQPYPGAHAVFMYSTAADGNVTLQLKEPDDLDRSSLAAMLARLQDDASFSISYQDTDILSDGSIDVLLGTGTGNVQGSSGNETVTATFDLFDSSSGPDLTLSPQTFTNSAEAFINDNSNSLGVPADNDPVSSSEDKKVPVSTEVVKLSVKRARPKAASPNRQGPQQCQVCAKVFGNASALAKHKLTHSDERKYVCTMCGKAFKRQDHLNGHMLTHRNKKPYECKAEGCGKSYCDARSLRRHTENHHSSSSVNASTTMSPAQGAASGDAASPHGSSCIQYAPPPTSTPGGKSQLQQLLATEPAKGGGGGSNDGLTKQQLDLIHQIMEQTQRQSQSSSKSSAKPSSKPVSKTPVKVQRIWSSATQQNTAPKANASASSPQSKVSSTTSSSTTNSANASKNEPKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDTDNKKCEKKDASGPPLQTASVSVRALIEEKIINKRITNPQTPTSEEVPRSSAPPLFPLTVHSSATSSDIDSKITSFVVPAPPQHTAEKARRHSDAEAFTVPRTPSTQQEAEALADLILKREKVSVKRTTSDPGQTQQPQQQIIQFQSGDSFTLTGVTYQSEDGDYLSPSIQDEVFTQVQDTMLLQSVDAQQLSSIQFQTDGLLQDHADQHLQDIVLEDYSHLQDNVVQSPSYQSNHSVNQELQAVLDSPLPESLAEFSTFHSTTNIDMPSPGYQTQSPAQYSGSPHTSLTAQSPLQSPLIRHDSPGFAYPTPPASHEGQSPCFGQNSILPMVSPKQNEYNQIVNDTPQTSLLAADFFTTTMSSSAAVEEALEEVLPGENIEADDLYPSLTNSPPPQSPISVGLTPVPSPLSNIPNSSASSPHPQNNNFATSQTASIQFPHYTLQSHMMPNSDDPLLSSSPKDFQAKKRFEFNGFPLKVISSNGILDSANFAGILLDSNGEIKLIQTGGNTFQTKNIVLTTGTPIVTSQSAPKEEDSKMQKQFKIFKATQIPAKVPSKLKYAGVDGGVKQEETNDVFLSPTTVPASPVRVSRKRPRSEPLQLPVLHHSRLRATRSKPQGAAPYTPLPILNPTRQGSGLYWSLKQKMCNETFENQESVNNWNNESIPETDSTPHINVGPQFQCAIPSFIPIHGRRSQEASREDLLWDPGISGSSDLEVDMYLDFACCAAIPGGGRNKEYAMHVLYLCGGNIHDAMLKIMQPAPSLPFGNPLHQYQYNDSDKWTASETELFHHALLKYDKDFTYVAQEIGSKTVKQCVQFYYVWKKVCVDEYRRVKQGRDRKNGYNRGADSDHEEKPLPDARLLGIADAGSPMPLQDHRNFICEFADCSASFNSRAALNGHIRIHGGTARNSPTRSQVSDRRPPSVTPTLCHSESPEDYPCKICGKVFTKIKSRSAHMKSHRPPDAEPAKRRDKDAAFSSSNFDISATSPFST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466131;
90% Identity: iTF_00466131;
80% Identity: iTF_00466131;