Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:8505725-8513272[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.011 1 11.4 2.5 2 23 11 32 10 32 0.95

2 15 0.011 1.1 11.3 5.3 1 23 38 60 38 60 0.97

3 15 0.0027 0.25 13.3 4.5 1 21 66 86 66 87 0.95

4 15 1.6 1.5e+02 4.6 0.1 7 22 125 140 125 140 0.87

5 15 0.00032 0.03 16.2 0.6 1 23 147 169 147 169 0.99

6 15 0.0018 0.16 13.9 2.9 1 23 175 197 175 197 0.97

7 15 8.8e-06 0.00081 21.1 3.0 1 23 203 225 203 225 0.98

8 15 0.017 1.6 10.7 5.4 1 23 231 253 231 253 0.98

9 15 3.1e-05 0.0028 19.4 2.1 1 23 259 281 259 281 0.98

10 15 0.0016 0.15 14.0 2.2 1 23 287 309 287 309 0.97

11 15 0.0082 0.76 11.8 2.6 3 23 317 337 317 337 0.99

12 15 0.0071 0.66 12.0 3.9 2 23 344 365 343 365 0.95

13 15 0.035 3.2 9.8 5.1 1 23 372 394 372 394 0.98

14 15 0.0013 0.12 14.3 4.0 3 23 402 422 400 422 0.97

15 15 0.57 53 6.0 1.1 3 23 430 450 428 450 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.011	1	11.4	2.5	2	23	11	32	10	32	0.95
2	15	0.011	1.1	11.3	5.3	1	23	38	60	38	60	0.97
3	15	0.0027	0.25	13.3	4.5	1	21	66	86	66	87	0.95
4	15	1.6	1.5e+02	4.6	0.1	7	22	125	140	125	140	0.87
5	15	0.00032	0.03	16.2	0.6	1	23	147	169	147	169	0.99
6	15	0.0018	0.16	13.9	2.9	1	23	175	197	175	197	0.97
7	15	8.8e-06	0.00081	21.1	3.0	1	23	203	225	203	225	0.98
8	15	0.017	1.6	10.7	5.4	1	23	231	253	231	253	0.98
9	15	3.1e-05	0.0028	19.4	2.1	1	23	259	281	259	281	0.98
10	15	0.0016	0.15	14.0	2.2	1	23	287	309	287	309	0.97
11	15	0.0082	0.76	11.8	2.6	3	23	317	337	317	337	0.99
12	15	0.0071	0.66	12.0	3.9	2	23	344	365	343	365	0.95
13	15	0.035	3.2	9.8	5.1	1	23	372	394	372	394	0.98
14	15	0.0013	0.12	14.3	4.0	3	23	402	422	400	422	0.97
15	15	0.57	53	6.0	1.1	3	23	430	450	428	450	0.95

Sequence Information

Coding Sequence: ATGGTAACGCACAATACCGAAAAGTCGTTGAGCTGTGACGTTTGCGACTATACGTGTCGATATTCCAGCAGCATGACGCTGCACAAATTGAaccacaccgacgagaagcggTTCAATTGCGGCCTCTGCGAATTCAAGTGCCAGCGAGCGGCACActtgaaacggcacatgttCACACACAACGACGAGAAACCATTCACCTGTGAGGTTTGCGATCACAAATTCAATCGTCTCGAACACTTGAAGGGCCACCAATGCCGACGGCTTTcggaaaataaaatcaagatcGAAATAACAGACGAATGTGGCCCATGTGGTTCCAAACACACACCGAAACGCACAGGCGAAAAGCCGCTTACATGTTACGCACGTGACTACAAATTTCGAGACGCTCGGAAATTGAAACGGCACGTGTTAACACGTACTGGGGAGAAACCGTTCCGTTGCGACCTTTGCACCTACGAAGGCGAACAACTCCGACAACTGAAAGCGCACATGCGaacacacaccggcgagaaactaTTTAAGTGCGACTTCTGTGATTACAAGTCCCGACAGTCCTCACGTTTGAAACGTCACTCATTAGTACACACCGGTGAAAAGCCGTTCAGCTGCGAGCTTTGCGATTGCAGATTCCGTTTTTCGTCCAACTTGGCGCagcacatgttaacgcacacgggcgagaagccgttcagttgcgatcaCTGCGCTTATAAATGCGGACAAATCACGAATTTCAGGAGGCACATGCTGACGCATACGGAAACCAAGCCGTACAGTTGCGACTCTTGCAGTTACAAATCTCGACAAtcctcaaatttaaaaaagcacatGATGATACACACCGGGGAGAAACCGTTTGCTTGTAGCGTCTGCGATTTCAAGTGCCGACAATCCGGAGATATGAAGCGTCACGAATTaacgcacaccgacgagaagccgctCGGTTGTAatttttgcgattacaagtgccgagGGGCCCGAAGCTTGAGGCagcacatgttaatacacaccggcgagaagccgctGAGTTGCGGCGCttgcgattataagtgtcgCCATCTTGGAACCTTGAGGCGGCACATGTTGAAGCACACGGTCGACGTGAAACCGTACAGCTGTAATGTTTGCGAGCACAAGTGCCAAAAGTCCGAGGACATGAGGCGTCACTTGTTGACACACACAGGCGGAAAACAGTTCGGTTGTGACCTGTGCGGTTACAGATGCCGACGGCTCGCGCACTTGAAACAGCACTTGCTGAGACATTcgggcgagaaaccgttcggctgtgacctttgcgattataagtgcctaGTTAAGGCAAGTTTGAAGAAGCACTTGTTGGCACATACCCATGATAAGAAAGAATAA
Protein Sequence: MVTHNTEKSLSCDVCDYTCRYSSSMTLHKLNHTDEKRFNCGLCEFKCQRAAHLKRHMFTHNDEKPFTCEVCDHKFNRLEHLKGHQCRRLSENKIKIEITDECGPCGSKHTPKRTGEKPLTCYARDYKFRDARKLKRHVLTRTGEKPFRCDLCTYEGEQLRQLKAHMRTHTGEKLFKCDFCDYKSRQSSRLKRHSLVHTGEKPFSCELCDCRFRFSSNLAQHMLTHTGEKPFSCDHCAYKCGQITNFRRHMLTHTETKPYSCDSCSYKSRQSSNLKKHMMIHTGEKPFACSVCDFKCRQSGDMKRHELTHTDEKPLGCNFCDYKCRGARSLRQHMLIHTGEKPLSCGACDYKCRHLGTLRRHMLKHTVDVKPYSCNVCEHKCQKSEDMRRHLLTHTGGKQFGCDLCGYRCRRLAHLKQHLLRHSGEKPFGCDLCDYKCLVKASLKKHLLAHTHDKKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465303;
90% Identity: iTF_00465303;
80% Identity: -