Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:7938909-7940483[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.011 0.99 11.4 2.8 1 23 2 24 2 24 0.98

2 16 0.047 4.3 9.4 1.2 3 23 32 52 30 52 0.96

3 16 0.00016 0.015 17.2 1.4 1 23 58 80 58 80 0.97

4 16 0.0016 0.14 14.1 3.3 1 23 86 108 86 108 0.96

5 16 0.002 0.18 13.7 2.8 2 23 113 133 112 133 0.96

6 16 0.0028 0.26 13.3 3.6 1 21 139 159 139 160 0.96

7 16 0.00021 0.019 16.8 3.6 2 23 170 192 169 192 0.94

8 16 0.002 0.18 13.7 3.5 2 23 221 242 220 242 0.96

9 16 0.00096 0.088 14.7 0.7 1 23 247 270 247 270 0.96

10 16 0.0061 0.56 12.2 5.1 2 23 283 304 282 304 0.96

11 16 0.011 0.98 11.4 0.3 3 23 312 332 310 332 0.95

12 16 8.7e-05 0.008 18.0 2.7 1 23 338 360 338 360 0.98

13 16 6.5e-05 0.006 18.4 1.4 2 23 380 401 379 401 0.97

14 16 0.0049 0.45 12.5 4.3 2 23 429 450 428 450 0.96

15 16 1.4 1.3e+02 4.8 3.5 2 23 459 480 458 480 0.88

16 16 0.088 8.1 8.5 5.7 2 23 496 518 495 518 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.011	0.99	11.4	2.8	1	23	2	24	2	24	0.98
2	16	0.047	4.3	9.4	1.2	3	23	32	52	30	52	0.96
3	16	0.00016	0.015	17.2	1.4	1	23	58	80	58	80	0.97
4	16	0.0016	0.14	14.1	3.3	1	23	86	108	86	108	0.96
5	16	0.002	0.18	13.7	2.8	2	23	113	133	112	133	0.96
6	16	0.0028	0.26	13.3	3.6	1	21	139	159	139	160	0.96
7	16	0.00021	0.019	16.8	3.6	2	23	170	192	169	192	0.94
8	16	0.002	0.18	13.7	3.5	2	23	221	242	220	242	0.96
9	16	0.00096	0.088	14.7	0.7	1	23	247	270	247	270	0.96
10	16	0.0061	0.56	12.2	5.1	2	23	283	304	282	304	0.96
11	16	0.011	0.98	11.4	0.3	3	23	312	332	310	332	0.95
12	16	8.7e-05	0.008	18.0	2.7	1	23	338	360	338	360	0.98
13	16	6.5e-05	0.006	18.4	1.4	2	23	380	401	379	401	0.97
14	16	0.0049	0.45	12.5	4.3	2	23	429	450	428	450	0.96
15	16	1.4	1.3e+02	4.8	3.5	2	23	459	480	458	480	0.88
16	16	0.088	8.1	8.5	5.7	2	23	496	518	495	518	0.94

Sequence Information

Coding Sequence: ATGTTCAGCTGTGACgcttgcgattacaaatgcaaGGAACGCGAACAGTTCAACGTTCACATGCTGAAACACACCGGAGAGAAACCGTTCGGTTGCGATTCCTGTGGTTTTAAGTGCCGAGGTCCTAACGGTTTGAAAAACCACATGTCAGAACATACCGATGAGAAACTGTTCATTTGCGGCGTTTGCGATAAAAAGTGTGAATCTTACGTGAAATTACAACGGCACATGATAATGCACATCGACACGGAGCCGTATAAATGTGACATCTGCGATTTCACGTGCGAAGATCATTCTAGTTTGAGAGAACACAAATTAGCTCACGAGGCACCGGTTAGTTGTAGTATTTGTCTGAAGTGCGTGAAACAATCAAATTTGAACCAGCACATGAAAACACATTCCAACAATAGACCGTACAAATGCAACCGTTGCGATTGCGCGTTCAAACACTCTGGTCGCTTGAAGTACCATATGTCAATAAGCACCTGCGAGAAGTCGGCATGGATTAGTTGTAGTCTTTGCGATTTTAAGTGCGCAAGACAATCACATTTGAGACGGCACATGTTGTTAATACATTCTCACAAAAGCAACAGCGACGATTCGACATCCAAACAGTCTGGTCAGCTAAAGTACCACATgtacaccggcgagaagcccatCAGTTGTAATTTTTGTGATTACAAGTGCCAATCTAGCGGAGATTTGAGGAAGCACATGACAAAGCACTCGTACACGACTTTTccttgtgatctttgcgattacaactGCCGACAAATTAAGGATTTGGAACAGCACATACGTGACGTACACGTGCATGTAAAAGTTGCCGACAAGCCGTGTTGGCTTTGctgtgatctttgtgattacaaGTGCAGGGAACGCAAAAACTTGAATGTGCACATGCTGAAACACATCGGAGAGAAGCCGATCGCTTGTGACTTCTGTGATTTTAAATGCCGAGATCCTGACGGTTTGAAAGAACACGCGTTAATACATGCCGGTGAGAAACTGTTCACCTGTGGTCTTTGCGATAAGAAGTGTGGATCTCACGGAGAATTAGAGCGACACATGTTAACACACAACGTCACGACATTCCCGAACGAACACAAATTAGCTCCTGCCGGGGAGGTACCGATTAGTTGTAGCATTTGCGATTTTAAGTGCGCGAACCTATCAGATTTGAGACAGCACATGTTGACGCATTCCGAGAAAGGCGGTCCCACGTCCGGACAGTCCGGTCATTTGATGTACCACATGTTGATAaccaccggcgagaaaccgttgcGTTGTAAGTTTTGCAATTACAAGTGCCGATCTAACGGTGATTTGGAAAAGCACGTGACGAAGCACATGACGAAACACATGCGCACTTGTTCTTGTAATCTTTGCGGTTATAACTGCCGACGAATTAATTTCTTACAGCACATACTCGACGCTCATACGCGTGTAAAAGTCGAGAACGCCGCCGACAAGTCGATCTGGCTTTGCTGTGATTATTGTCAGCACAGCTGCCGAAATATGAAGGACTTGAAAGAGCACATTCTCAATGCACATGTAAAACCCGAAGAGGTTTAA
Protein Sequence: MFSCDACDYKCKEREQFNVHMLKHTGEKPFGCDSCGFKCRGPNGLKNHMSEHTDEKLFICGVCDKKCESYVKLQRHMIMHIDTEPYKCDICDFTCEDHSSLREHKLAHEAPVSCSICLKCVKQSNLNQHMKTHSNNRPYKCNRCDCAFKHSGRLKYHMSISTCEKSAWISCSLCDFKCARQSHLRRHMLLIHSHKSNSDDSTSKQSGQLKYHMYTGEKPISCNFCDYKCQSSGDLRKHMTKHSYTTFPCDLCDYNCRQIKDLEQHIRDVHVHVKVADKPCWLCCDLCDYKCRERKNLNVHMLKHIGEKPIACDFCDFKCRDPDGLKEHALIHAGEKLFTCGLCDKKCGSHGELERHMLTHNVTTFPNEHKLAPAGEVPISCSICDFKCANLSDLRQHMLTHSEKGGPTSGQSGHLMYHMLITTGEKPLRCKFCNYKCRSNGDLEKHVTKHMTKHMRTCSCNLCGYNCRRINFLQHILDAHTRVKVENAADKSIWLCCDYCQHSCRNMKDLKEHILNAHVKPEEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465322;
90% Identity: -
80% Identity: -