Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:72663425-72665014[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0095 1 11.4 2.8 1 23 2 24 2 24 0.98

2 17 0.0055 0.61 12.1 0.7 1 23 30 52 30 52 0.96

3 17 0.00023 0.025 16.5 1.7 1 23 58 80 58 80 0.97

4 17 0.0059 0.66 12.0 2.5 1 23 86 108 86 108 0.97

5 17 0.0029 0.32 13.0 3.8 2 23 113 133 112 133 0.96

6 17 0.0025 0.27 13.2 3.6 1 21 139 159 139 160 0.96

7 17 0.0028 0.32 13.0 3.8 2 23 170 192 169 192 0.94

8 17 1.1 1.2e+02 4.9 0.1 9 21 202 214 200 215 0.90

9 17 0.00089 0.099 14.6 2.5 2 23 221 242 220 242 0.96

10 17 0.00085 0.094 14.7 0.7 1 23 247 270 247 270 0.96

11 17 0.041 4.6 9.4 5.5 2 23 283 304 282 304 0.96

12 17 0.024 2.7 10.1 0.4 1 23 310 332 310 332 0.96

13 17 0.00013 0.014 17.3 3.3 1 23 338 360 338 360 0.98

14 17 0.00051 0.056 15.4 1.4 2 23 385 406 384 406 0.97

15 17 0.0026 0.29 13.2 6.6 1 23 436 458 436 458 0.97

16 17 6.7 7.4e+02 2.4 0.9 1 10 463 472 463 480 0.83

17 17 1 1.2e+02 5.0 4.8 2 23 501 523 500 523 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0095	1	11.4	2.8	1	23	2	24	2	24	0.98
2	17	0.0055	0.61	12.1	0.7	1	23	30	52	30	52	0.96
3	17	0.00023	0.025	16.5	1.7	1	23	58	80	58	80	0.97
4	17	0.0059	0.66	12.0	2.5	1	23	86	108	86	108	0.97
5	17	0.0029	0.32	13.0	3.8	2	23	113	133	112	133	0.96
6	17	0.0025	0.27	13.2	3.6	1	21	139	159	139	160	0.96
7	17	0.0028	0.32	13.0	3.8	2	23	170	192	169	192	0.94
8	17	1.1	1.2e+02	4.9	0.1	9	21	202	214	200	215	0.90
9	17	0.00089	0.099	14.6	2.5	2	23	221	242	220	242	0.96
10	17	0.00085	0.094	14.7	0.7	1	23	247	270	247	270	0.96
11	17	0.041	4.6	9.4	5.5	2	23	283	304	282	304	0.96
12	17	0.024	2.7	10.1	0.4	1	23	310	332	310	332	0.96
13	17	0.00013	0.014	17.3	3.3	1	23	338	360	338	360	0.98
14	17	0.00051	0.056	15.4	1.4	2	23	385	406	384	406	0.97
15	17	0.0026	0.29	13.2	6.6	1	23	436	458	436	458	0.97
16	17	6.7	7.4e+02	2.4	0.9	1	10	463	472	463	480	0.83
17	17	1	1.2e+02	5.0	4.8	2	23	501	523	500	523	0.93

Sequence Information

Coding Sequence: ATGTTCAGCTGCGACgcttgcgattacaaatgcaagGAACGCGAACAGTTCAACGTTCACATGCTGAAACACACCGGAGAGAAACCGTTCGCTTGCGATTCCTGTGGTTTTAAATGCCGAGGTCCCAACGGCTTGAAAAACCACATGTTAGAACATACCGATGAGAAACTGTTCATTTGCGGCGTTTGCGATAAGAAGTGTCAATCTTACGGAAAATTACAACGGCACATGATAATGCACATCGACACAGAGCCGTATAAATGTGACATCTGCGATTTCACATGTGAGGAGCATTCTGGTTTGAAAGAACACAGATTAGCTCACGAGGCACCGACTAGTTgtagtatttgccttaagtGCGTGAAACAATCAAATTTGAGGCAGCACATGAAAACACATTCCAACAATAGGCCATACAAATGCAACCGTTGCGATTGCGCGTTCAAACACTCTGGTCGCTTGAAGTACCACATGTCAATAAGCACCTGCGAGAAGTCGGCGTGGATtagttgtggtctttgcgattttaaGTGCGCAAGACAATCACATATGAGACGGCACATGTTGTTAACACATTCCCACAAAAGCAACAGCGATGATTCGACGTTCAAACAGTCTGGTCAGCTAAAGTACCACATgtacaccggcgagaagcccatCAGTTGTAATTTTTGTGATTACAAGTGCCAATCTAGCGGAGATTTGAGGAAGCACATGGCAAAGCACACGTACACGACTTTtccttgtgatctttgcgattacaactGCCGACAAATTAAGGATTTGGAACAGCACATACGTGACGTACATGTGCATGTGAAAGTTGCCGATAAGCCGTGTTGGCTTTGCTGTGATCTTTGTGAGTACAAGTGCAGGGAACGCAAAAACTTGAATTTGCACATGCTGAAACACACCCGAGAGAAGCCGTTCGCTTGTGATTTCTGTGATTTTAAATGCCGAGGTCCCGACGGTTTGAAAGAACACGCGTTAATACATGCCGGTGAAAAACTGTTCACCtgtggtctttgcgataagAAGTGTCGATCTCACGGAGAATTAGAGCGACACGTGTTAACGCACGACGTCAGGACATCCCGAGATCCCTCCAGTACGAACGAACACAAATTAGCTAACGCCGGGGAGGTGCCGATTAGTTGCAGCATTTGCGATTTTAAGTGCGCGAAACTATCAGATTTGAGTCAGCACATGTTGACGCATTCCGAGAAGGGCAAACATGACGGTCCCACGTTCGGAcagtccggtcgtctgatgtACCACATGTTGATAaccaccggcgagaaaccgttctgTTGTAAgttttgcgattacaagtgccgaTCTAACGGTGATTTGGAAAAGCACATCTCGAAGCACAAGCGCAAGACTTTTacttgtgatctttgcggtTATAACTGCGGACGAATTAATTCGGTGCAGCACATACTCGACGCTCATACACGTGTGAAAGTCGATAATGCCACCGACAAGTCGATCTGGCTTTGCTGTGATCTGTGTGAGCACAACTGCCGCAGTATGAAGGACTTGAAAGAGCACATTCTTAACGCACATGTAAAACCCGAAGAGGTTTAA
Protein Sequence: MFSCDACDYKCKEREQFNVHMLKHTGEKPFACDSCGFKCRGPNGLKNHMLEHTDEKLFICGVCDKKCQSYGKLQRHMIMHIDTEPYKCDICDFTCEEHSGLKEHRLAHEAPTSCSICLKCVKQSNLRQHMKTHSNNRPYKCNRCDCAFKHSGRLKYHMSISTCEKSAWISCGLCDFKCARQSHMRRHMLLTHSHKSNSDDSTFKQSGQLKYHMYTGEKPISCNFCDYKCQSSGDLRKHMAKHTYTTFPCDLCDYNCRQIKDLEQHIRDVHVHVKVADKPCWLCCDLCEYKCRERKNLNLHMLKHTREKPFACDFCDFKCRGPDGLKEHALIHAGEKLFTCGLCDKKCRSHGELERHVLTHDVRTSRDPSSTNEHKLANAGEVPISCSICDFKCAKLSDLSQHMLTHSEKGKHDGPTFGQSGRLMYHMLITTGEKPFCCKFCDYKCRSNGDLEKHISKHKRKTFTCDLCGYNCGRINSVQHILDAHTRVKVDNATDKSIWLCCDLCEHNCRSMKDLKEHILNAHVKPEEV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466745;
90% Identity: -
80% Identity: -