Dpar032199.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Dorcus parallelipipedus
Gene Symbol
-
Assembly
GCA_958336345.1
Location
OY284481.1:2970277-2972516[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.3 28 6.9 0.5 2 20 165 183 164 185 0.94
2 16 0.0022 0.2 13.6 1.2 1 20 189 208 189 210 0.93
3 16 0.031 2.9 10.0 0.7 2 21 265 284 264 285 0.93
4 16 0.014 1.3 11.0 1.0 1 23 289 311 289 311 0.96
5 16 0.48 45 6.2 2.0 2 21 371 390 370 391 0.95
6 16 0.014 1.3 11.0 3.0 1 23 395 417 395 417 0.97
7 16 0.00011 0.0099 17.7 1.6 1 23 425 447 425 447 0.94
8 16 1.9e-05 0.0017 20.1 7.9 1 23 453 475 453 475 0.99
9 16 0.00065 0.06 15.3 0.6 1 23 484 506 484 506 0.97
10 16 5.1e-05 0.0047 18.7 2.2 1 23 512 534 512 534 0.97
11 16 2.5e-05 0.0023 19.7 2.1 1 23 540 562 540 562 0.98
12 16 5.2e-05 0.0048 18.7 2.9 1 20 568 587 568 591 0.95
13 16 0.0001 0.0096 17.8 0.1 1 23 597 619 597 619 0.92
14 16 6.5e-06 0.0006 21.5 4.2 1 23 626 648 626 648 0.98
15 16 5.2e-05 0.0048 18.7 5.0 1 23 654 676 654 676 0.97
16 16 0.00058 0.054 15.4 6.5 1 23 682 704 682 704 0.98

Sequence Information

Coding Sequence
ATGGCTAAAGTATGTCGCCTTTGCCTGCAAATAATAGGAGATGCGTATTATTCCATCGATGAAAACGCTGTAGTAAGAAGTCGaaacaaaattatgattttaatgCCAGAACTGGAACTGAATGTTGTTGCTGAGCCTATTCTTTGTCCTTTATGCTATGGTACGTTACACGCTGCATACGAATTCAAGTGCATCTGTCTAGCTAACGAACAAAGAATCGTCGAGTATTTGAAGAACGATAAGCAACCCCCAATAAACTTATGCGACTTATTAGAAGAAACTGATTCAAAAACTGTAATTCCAGCGAGTTTAATGCGTGAAAATTTTGGAATAAATATCAATGAGTTGGAGACTGTGAAGAAAGAAAGTATATTAAAGCCAGAGCCATTAGAAGTTTTATGTGATGTTGAAAATGTATTCACTGACTCATTTAAAGAAGCAGAAAGGAATGAGGCAGACAAAAAGAATGAGACACTTGTTAAAGGTGGCAtgaaatgttcaaagtgttccaGTGAATTTACAGTTCTCAAGGAATATCGAAAACACTTGGCCCAATGTACAACCTATGAATGTAACATAtgcaataaacaatttaaattaaagagtAGATTTGTAAAACATAAGGCGACGCAATGTACAGAAACAGGGAAAAACGTGCAAGTTGCACAAAAAGATTCGGATAGGGAAACGAGTGCAAGTCCTGAACCAGAACAATATAAAAGCAATAATCTGGAAAATAATGAATGTGAAAGTCTCACTCCAAAAGAAGATAAAAGCACTGCAGGAAGTGTCaagtgttcaaattgttccACTGAGTTTACAGTCTCCAAGCTGTATAGGAAACATTTAGAAAAATGTTCCCCCTACGAGTGTGACATctgtaacaaaaaatttatgttagaGGGAAGGTTTTTACGACACAAATTATCACATAAAACCAGTGGAAAGAAAGATAAAGGTGGCAGTGCCCACGCAAATAAATTAACACAAAGCACAGGTGAAGAAGAAAGTGTAAAAGAAGAATCGGAAACGAAAGTGAGTGCGAACCCCGAGGCAGACTCGAACAATACTACAGAAAAAAACAGTGAAACTGAAATTAAACTTGGGATTAAATGTTCAAAGTGCCGcaataaatttatgcttaaaaaAGATTATAAAAGACATGTAAGACAATGTGCTCCGTACCAGTGTgatatttgcaataaaaaatttatgttggAAAACAGATTTAAAAAGCACAAGTTATCGCATAGCACAACCACAGAACAAACATTCTTATGTGAAGTGTGTAGTAAGACTTTTCGAAATTCATATCTCTTTCGACAACACCTCCTGTTGCACACAGGGCTGAAGCCCTTCAAGTGTCCGACATGTGACAAGATGTTTGCAACAAAACATCATTTATGTGCACATAAACAAACGCATTTGAACAAGATAAGAGAGAGGCGACACGTGTGTGAAATCTGTGGGAAGAAGTTTGCAGCTTTTGTGGTATTGCGAAGGCATAGAATTACGCACTCGCAGGAGAAGAAGTTTTTCTGCAAAATCTGTGATAAGGGTTTCAACATCAAAATGTATTTACAACAGCATATGAAGAGGCACGTAGGCGAGAAACCATATGTTTGCGACACTTGCAATTCGTGTTTTGCCTCGAAAAGTAATTTGGCAGAACACTATCGCAGTCATACTGGAGAAAGACCTTATAAATGTAAGATGTGTGAAAAGAGCTTCGCACAAAGCAGCACATTAAGGGTGCATGTCCAATGCACACATTCCGATGAGAAGCCCTTCGCTTGTGAAGTATGTGGAAAAAGGTTTCCTCTGAAAGGCAACCTTCGAGCACATTCGGCTTTGCACAtggaaaatgtcgaaaaattTTCTTGTCCGTACTGTGACAAAATTTTTCACAAGAACAGTTATCTGAAGCAGCACATTAAAAGGCATACAGAAGAGCCGACGCATATGTGTACTTTATGTGAGAAAGGCTTTTTTACATCGCATGAATTGAAGAAACACATGAGGATCCATACTGGAGAAAAACCTTTTGAGTGTGAGATCTGCCATCAAAGGTACAGTCAGAGGCACAATATGCATGTGCATATGAAAGTGCATTCGAAAGGTCCATGA
Protein Sequence
MAKVCRLCLQIIGDAYYSIDENAVVRSRNKIMILMPELELNVVAEPILCPLCYGTLHAAYEFKCICLANEQRIVEYLKNDKQPPINLCDLLEETDSKTVIPASLMRENFGININELETVKKESILKPEPLEVLCDVENVFTDSFKEAERNEADKKNETLVKGGMKCSKCSSEFTVLKEYRKHLAQCTTYECNICNKQFKLKSRFVKHKATQCTETGKNVQVAQKDSDRETSASPEPEQYKSNNLENNECESLTPKEDKSTAGSVKCSNCSTEFTVSKLYRKHLEKCSPYECDICNKKFMLEGRFLRHKLSHKTSGKKDKGGSAHANKLTQSTGEEESVKEESETKVSANPEADSNNTTEKNSETEIKLGIKCSKCRNKFMLKKDYKRHVRQCAPYQCDICNKKFMLENRFKKHKLSHSTTTEQTFLCEVCSKTFRNSYLFRQHLLLHTGLKPFKCPTCDKMFATKHHLCAHKQTHLNKIRERRHVCEICGKKFAAFVVLRRHRITHSQEKKFFCKICDKGFNIKMYLQQHMKRHVGEKPYVCDTCNSCFASKSNLAEHYRSHTGERPYKCKMCEKSFAQSSTLRVHVQCTHSDEKPFACEVCGKRFPLKGNLRAHSALHMENVEKFSCPYCDKIFHKNSYLKQHIKRHTEEPTHMCTLCEKGFFTSHELKKHMRIHTGEKPFECEICHQRYSQRHNMHVHMKVHSKGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00465221;
90% Identity
iTF_00465221;
80% Identity
-