Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284483.1:28627685-28629501[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.9 4.5e+02 3.0 0.1 3 13 116 126 114 133 0.89

2 15 0.018 1.6 10.7 0.1 1 23 185 207 185 207 0.98

3 15 4.7 4.4e+02 3.1 3.2 1 13 213 225 213 226 0.90

4 15 9.6e-07 8.9e-05 24.2 3.2 1 23 233 255 233 255 0.99

5 15 2.5e-06 0.00023 22.8 2.1 1 23 261 283 261 283 0.98

6 15 4.4e-05 0.0041 18.9 2.5 1 23 289 311 289 311 0.98

7 15 2.6e-06 0.00024 22.8 4.3 1 23 317 339 317 339 0.98

8 15 0.00035 0.032 16.1 5.1 1 23 345 367 345 367 0.98

9 15 1.6e-05 0.0015 20.3 3.8 1 23 373 395 373 395 0.98

10 15 5.3e-05 0.0049 18.7 1.1 1 21 402 422 402 423 0.94

11 15 6.4e-06 0.00059 21.6 1.6 2 23 431 452 430 452 0.97

12 15 0.00011 0.01 17.7 3.4 1 23 458 480 458 480 0.98

13 15 6.7e-06 0.00062 21.5 4.3 1 23 486 508 486 508 0.98

14 15 1.3e-05 0.0012 20.5 1.9 1 23 514 536 514 536 0.97

15 15 3.3e-06 0.00031 22.5 1.5 1 23 542 564 542 564 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.9	4.5e+02	3.0	0.1	3	13	116	126	114	133	0.89
2	15	0.018	1.6	10.7	0.1	1	23	185	207	185	207	0.98
3	15	4.7	4.4e+02	3.1	3.2	1	13	213	225	213	226	0.90
4	15	9.6e-07	8.9e-05	24.2	3.2	1	23	233	255	233	255	0.99
5	15	2.5e-06	0.00023	22.8	2.1	1	23	261	283	261	283	0.98
6	15	4.4e-05	0.0041	18.9	2.5	1	23	289	311	289	311	0.98
7	15	2.6e-06	0.00024	22.8	4.3	1	23	317	339	317	339	0.98
8	15	0.00035	0.032	16.1	5.1	1	23	345	367	345	367	0.98
9	15	1.6e-05	0.0015	20.3	3.8	1	23	373	395	373	395	0.98
10	15	5.3e-05	0.0049	18.7	1.1	1	21	402	422	402	423	0.94
11	15	6.4e-06	0.00059	21.6	1.6	2	23	431	452	430	452	0.97
12	15	0.00011	0.01	17.7	3.4	1	23	458	480	458	480	0.98
13	15	6.7e-06	0.00062	21.5	4.3	1	23	486	508	486	508	0.98
14	15	1.3e-05	0.0012	20.5	1.9	1	23	514	536	514	536	0.97
15	15	3.3e-06	0.00031	22.5	1.5	1	23	542	564	542	564	0.98

Sequence Information

Coding Sequence: ATGTACATTGAAAAGATTTGCCGAATTTGTCTGCGGAAAGTCGTCAACTTCACGAATTTAAACCTGGGACAACCGACGTTCAGGACGAAGCTGAAGACGTGCGCGCCCGAAATGAACCTGGACGTCACAGTGGAGCCGGTCGCCTGCAACTCGTGCATCGCCGCGTTGAATGACGCGCACGAATTTGTCCTCATGTGTTCGGCTACAGAAGATAAAATACAGAGACACATAGAAGGTCGAACACGGATCGATCTTGCAGAGTTGTTAGAGGCCCCGGCTAGGTGTGATCAGTTAGAAGAAACAAGCAGGGATTGCAACAGCAATATGAATGATTCAGATTACTGGTGTGTTCAGTGCAACCGCAGTTTTCCAGACAGTGTACTACATATTAAGTCACACATTTACAAGAGGAAAGAATGTGGGAAgttatttattgaaaagaaaGATAGTCCTGTGCCTGGCCCAacttgtaatttacaatgtgaTAGTGATCACATTCATCCGAATGAAGAGGACATGATAGACGAGAAAAAAGAGCACGTGGTGACACATTTCGAATGTGCAATCTGTGCACAGTCGTTTATCTTAAAGGCCGACATAATGTCGCACATGTCATCACATGCCAGTGAAAATCCGTACTTCTGTGAGTCTTGCAATAAGTGTTACAGTCGAGCGCAAGTCGATGACCACAAGTCGTTCCAATGCGAAACCTGTGGCAAATGCTTCAGCGCCAAGAGCTACCTAATTAATCATTTAAAGACACACTCGGACGCAAGACCCTATGATTGCAAAGAATGCGACAAGACCTTTCGCACGGCCAACAACTTATACATGCACAAGCGATCTCATTTGAATGAGAAACCTTTCGAGTGCCACATCTGCAAACTGAGGTTCCGATCTAACAGCGATAAGACGGTTCACATCCGAATCCACACCGGAAATAAACCGCATAAGTGCGTCTATTGCGATCAGGCTTTCACGAGGGCCCAACATCTAAAGCGGCACTTGAGAGTTCACACGGGCGAGAGGCCCTATCATTGCCACTTGTGCACCAAAACGTTCAGCGAGAAGGTGGGCTTGAAAAACCACCTGCTCCGCCACAGCGACACCAAACCCTACCACTGCAAAATCTGCGACAAGCGCTACAGTTTAAGAAGCAGCCTGCAATCGCACCTCAACACACACCAACATAGCAAGGATGTTTTCCCCTGCAACGTTTGCAAGAAGCTGTTCACCTCTCAGTCCAGCCTCACCCGACATAATCGGTACTGCGACGGAGTGGGGACTTTGGTCTGCCAAGTCTGCAAGCGAAGTTTCACTTCGAAACAGTTCCTGGAGAATCACATGCGTTCGCACACGGGGGAAAAACCGTTCCAGTGCGAAACTTGCGGGAAATGCCTGGCTCATAAGAACAGCCTCGACGAGCACATGCGGTTGCACAGCGGCGTGCGTCCATTCGAATGCAAGATTTGCCATAAACGTTTCAACACCCAGGGGTACCTCAACATACACAGACGATATCACACCGGAGAAAAACCCTTCGTTTGCACCATATGCGACAAAAGATTCGTGGAGCGAAACCACTTGAACAAGCACGTGCAGTTGCACAGCGGATCGAGGCCGTACATTTGCAAGGTGTGCCGAAAGACGTACACGACCAAGTCTAACCTAAACGAGCACGAGAAAATTCACAAGGGAGTTCAACGCAAACGAGTCACCAGGATTAAGCGCATCGTCGAAGAAGACATTGTTTGA
Protein Sequence: MYIEKICRICLRKVVNFTNLNLGQPTFRTKLKTCAPEMNLDVTVEPVACNSCIAALNDAHEFVLMCSATEDKIQRHIEGRTRIDLAELLEAPARCDQLEETSRDCNSNMNDSDYWCVQCNRSFPDSVLHIKSHIYKRKECGKLFIEKKDSPVPGPTCNLQCDSDHIHPNEEDMIDEKKEHVVTHFECAICAQSFILKADIMSHMSSHASENPYFCESCNKCYSRAQVDDHKSFQCETCGKCFSAKSYLINHLKTHSDARPYDCKECDKTFRTANNLYMHKRSHLNEKPFECHICKLRFRSNSDKTVHIRIHTGNKPHKCVYCDQAFTRAQHLKRHLRVHTGERPYHCHLCTKTFSEKVGLKNHLLRHSDTKPYHCKICDKRYSLRSSLQSHLNTHQHSKDVFPCNVCKKLFTSQSSLTRHNRYCDGVGTLVCQVCKRSFTSKQFLENHMRSHTGEKPFQCETCGKCLAHKNSLDEHMRLHSGVRPFECKICHKRFNTQGYLNIHRRYHTGEKPFVCTICDKRFVERNHLNKHVQLHSGSRPYICKVCRKTYTTKSNLNEHEKIHKGVQRKRVTRIKRIVEEDIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465205;
90% Identity: iTF_00465205;
80% Identity: -