Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065422.1:491248-493046[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.9 8.8e+02 2.2 0.7 3 13 116 126 114 133 0.87

2 15 0.0005 0.055 15.4 0.2 1 23 179 201 179 201 0.98

3 15 4.1 4.5e+02 3.1 3.2 1 13 207 219 207 220 0.90

4 15 2.2e-06 0.00025 22.8 4.5 1 23 227 249 227 249 0.99

5 15 1.8e-06 0.0002 23.1 2.0 1 23 255 277 255 277 0.98

6 15 0.00022 0.024 16.5 2.4 1 23 283 305 283 305 0.98

7 15 7.3e-07 8e-05 24.4 4.5 1 23 311 333 311 333 0.98

8 15 0.0003 0.033 16.1 5.1 1 23 339 361 339 361 0.98

9 15 6.9e-05 0.0077 18.1 3.0 1 23 367 389 367 389 0.98

10 15 4.6e-05 0.0051 18.7 1.1 1 21 396 416 396 417 0.94

11 15 3.4e-06 0.00038 22.2 1.2 2 23 425 446 424 446 0.97

12 15 9.5e-05 0.011 17.7 3.4 1 23 452 474 452 474 0.98

13 15 5.8e-06 0.00064 21.5 4.3 1 23 480 502 480 502 0.98

14 15 1.2e-05 0.0013 20.6 1.9 1 23 508 530 508 530 0.97

15 15 2.9e-06 0.00032 22.5 1.5 1 23 536 558 536 558 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.9	8.8e+02	2.2	0.7	3	13	116	126	114	133	0.87
2	15	0.0005	0.055	15.4	0.2	1	23	179	201	179	201	0.98
3	15	4.1	4.5e+02	3.1	3.2	1	13	207	219	207	220	0.90
4	15	2.2e-06	0.00025	22.8	4.5	1	23	227	249	227	249	0.99
5	15	1.8e-06	0.0002	23.1	2.0	1	23	255	277	255	277	0.98
6	15	0.00022	0.024	16.5	2.4	1	23	283	305	283	305	0.98
7	15	7.3e-07	8e-05	24.4	4.5	1	23	311	333	311	333	0.98
8	15	0.0003	0.033	16.1	5.1	1	23	339	361	339	361	0.98
9	15	6.9e-05	0.0077	18.1	3.0	1	23	367	389	367	389	0.98
10	15	4.6e-05	0.0051	18.7	1.1	1	21	396	416	396	417	0.94
11	15	3.4e-06	0.00038	22.2	1.2	2	23	425	446	424	446	0.97
12	15	9.5e-05	0.011	17.7	3.4	1	23	452	474	452	474	0.98
13	15	5.8e-06	0.00064	21.5	4.3	1	23	480	502	480	502	0.98
14	15	1.2e-05	0.0013	20.6	1.9	1	23	508	530	508	530	0.97
15	15	2.9e-06	0.00032	22.5	1.5	1	23	536	558	536	558	0.98

Sequence Information

Coding Sequence: ATGTACATCGAAAAGATTTGCCGAATCTGTCTGCGGAAAGTCGTCAACTTCACGAATTTAAACCTGGGACAGCCGACGTTCAGGACGAAGCTGAAGACGTGCGCGCCCCAAATGAACCTGGACGTCACAGAGGAGCCGGTCGCCTGCAACTCGTGCATCGCCGCGTTGAATGACGCCCATGAATTTGTCCTCATGTGTTCGGCTACAGAAGATAAAATACAGAGACACATAGAAGGTCGAACACGGATCGATCTTGCAGAGTTGTTAGAAGCCCCGGCTAGATGTGATCAGTTAGAAGAAACAAGCATGGATTTTAACAGCAATACGAATGATTCAGGTTACTGGTGTGTTCAGTGCAACCGCAGTTTTCCAGACAGTTTACTACATATTAGGTCACACTTTTACAAGAGGAAAGAATGTGGGAAGTTATTTATCAAAAAGGAAGATAGTGCTGCGCCTGGCACAACTTGTAATTTGCAATGTGACAGTGATCACATTCATCTGAATGAGAAAAAAGAGCACATGGTGACACATTTCGAATGTGGAATCTGTGCACAGTCGTTTACCTTAAAGTCCGACGTAATGTCGCACATGTCATCACATGCCAGCGAAAATCCCTACTTCTGTGAGTCTTGCAATAAATGTTACAGTCGAGCGCAAGTCGATGACCACAAGTCGTTCCAATGTGAAACCTGCGGCAAATGCTTCAGCGCCAAGAGCTACCTGTTCAATCATTTAAAGACGCACTCGGACGCAAGACCCTACGATTGCAAAGAATGCGACAAGTCCTTTCGCACGGCCAACAACTTATACATGCACAAGCGATCTCATTTGAACGAGAAACCTTTCGAGTGCCACGTCTGCAAACTGAGGTTCCGATCTAACAGTGATAAGACGGTTCACGTCCGAATCCACACCGGAAATAAACCGCATAAGTGCGACTATTGCGACCAGGCTTTCACGAGGGCCCAACACCTAAAGCGGCACTTGAGAGTTCACACGGGCGAGAAGCCCTATCATTGCCACTTGTGCACCAAAACGTTCAGCGAGAAGGTGGGCTTGAAAAACCACCTGCTCCGCCACAGCGACACCAAACCCTACCACTGCAAAATCTGCGACAAGCGCTACGGTTTAAGAAGCAGCCTGCAATCGCACCTCAACACGCACCAACATAACAAGGACGTTTTCCCCTGCAACGTTTGCAAGAAGCTGTTCACTTCTCAGTCTAGCCTCACTCGACATAATCGGTACTGCGACGGAGTGGGGACTTTGGTCTGTGAAGTCTGCAAGCGAAGTTTCACTTCGAAACAGTTCCTGGAGAATCACATGCGTTCGCACACGGGGGAGAAACCGTTCCAGTGCGAAACCTGCGGGAAATGCCTGGCTCATAAGAACAGCCTCGACGAGCACATGCGGTTGCATAGCGGCGTGCGTCCGTTCGAATGCAAGATTTGCCATAAACGTTTCAACACCCAGGGGTACCTCAACATACATAGGCGATATCACACCGGAGAAAAACCATTCGTTTGCACCATATGCGACAAACGATTCGTGGAGCGGAACCACTTGAACAAGCACGTGCAGTTGCACAGCGGATTGAGGCCGTACATTTGCAAGGTGTGCCGAAAGACGTACACGACCAAGTCTAACCTAAACGAGCACGAGAAGATTCACAAGGGAGTTCAACGCAAACGAGTCACCAGGATTAAGCGCATCGCCGAAGAAGACGTTGTATGA
Protein Sequence: MYIEKICRICLRKVVNFTNLNLGQPTFRTKLKTCAPQMNLDVTEEPVACNSCIAALNDAHEFVLMCSATEDKIQRHIEGRTRIDLAELLEAPARCDQLEETSMDFNSNTNDSGYWCVQCNRSFPDSLLHIRSHFYKRKECGKLFIKKEDSAAPGTTCNLQCDSDHIHLNEKKEHMVTHFECGICAQSFTLKSDVMSHMSSHASENPYFCESCNKCYSRAQVDDHKSFQCETCGKCFSAKSYLFNHLKTHSDARPYDCKECDKSFRTANNLYMHKRSHLNEKPFECHVCKLRFRSNSDKTVHVRIHTGNKPHKCDYCDQAFTRAQHLKRHLRVHTGEKPYHCHLCTKTFSEKVGLKNHLLRHSDTKPYHCKICDKRYGLRSSLQSHLNTHQHNKDVFPCNVCKKLFTSQSSLTRHNRYCDGVGTLVCEVCKRSFTSKQFLENHMRSHTGEKPFQCETCGKCLAHKNSLDEHMRLHSGVRPFECKICHKRFNTQGYLNIHRRYHTGEKPFVCTICDKRFVERNHLNKHVQLHSGLRPYICKVCRKTYTTKSNLNEHEKIHKGVQRKRVTRIKRIAEEDVV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466629;
90% Identity: iTF_00466629;
80% Identity: -