Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284476.1:10115213-10119141[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.8e-07 9e-05 24.1 0.5 1 23 184 206 184 206 0.98

2 12 0.00013 0.012 17.4 0.9 2 23 211 232 210 232 0.97

3 12 1.3e-06 0.00012 23.8 4.0 1 23 238 260 238 260 0.96

4 12 2.7e-05 0.0025 19.6 2.1 3 23 268 288 266 288 0.96

5 12 0.00012 0.011 17.6 0.0 3 23 296 316 294 316 0.95

6 12 9.8e-06 0.0009 21.0 2.6 1 23 322 344 322 344 0.99

7 12 4.1e-07 3.7e-05 25.3 0.1 1 23 350 372 350 372 0.99

8 12 8.9e-05 0.0082 18.0 0.5 1 23 378 400 378 400 0.97

9 12 5.3e-06 0.00049 21.8 0.2 1 23 406 428 406 428 0.99

10 12 7.8e-06 0.00072 21.3 3.4 1 23 434 456 434 456 0.99

11 12 0.00055 0.051 15.5 3.7 1 23 462 484 462 484 0.98

12 12 1.2e-05 0.0011 20.7 2.5 1 23 490 512 490 513 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.8e-07	9e-05	24.1	0.5	1	23	184	206	184	206	0.98
2	12	0.00013	0.012	17.4	0.9	2	23	211	232	210	232	0.97
3	12	1.3e-06	0.00012	23.8	4.0	1	23	238	260	238	260	0.96
4	12	2.7e-05	0.0025	19.6	2.1	3	23	268	288	266	288	0.96
5	12	0.00012	0.011	17.6	0.0	3	23	296	316	294	316	0.95
6	12	9.8e-06	0.0009	21.0	2.6	1	23	322	344	322	344	0.99
7	12	4.1e-07	3.7e-05	25.3	0.1	1	23	350	372	350	372	0.99
8	12	8.9e-05	0.0082	18.0	0.5	1	23	378	400	378	400	0.97
9	12	5.3e-06	0.00049	21.8	0.2	1	23	406	428	406	428	0.99
10	12	7.8e-06	0.00072	21.3	3.4	1	23	434	456	434	456	0.99
11	12	0.00055	0.051	15.5	3.7	1	23	462	484	462	484	0.98
12	12	1.2e-05	0.0011	20.7	2.5	1	23	490	512	490	513	0.96

Sequence Information

Coding Sequence: ATGGAAGAATTTAATATAACTGTAATTACAAACATAAATCGACTGTGTAGGACATGCCTCTCAGAGAGAAATGAGCAAGATTTGCGGTTGATATTCGAAGCGGCAATCGATACTATGCTGAAAGGATTGGCAGATATTAGCGCTAGCAAGGATGACGGCTTGCCAAGTTACATGTGCAGGGACTGCGTGCTTCAGTTAGGTTTAGCTTTTACATTTAAAGAGCAGTGTCAGAAATCCGACGCACAGTTACGAGAGTTATTATTGCCACCTCCGCAGACACATCTACAACCTAAGTCGTTAGTGATCAATTTTAACGTCGAAGAACAATGTTCGAGCACAGAATCTGATCACAAGACAATACAACTAGATCCGGTTAAAATTCAACAAATTAACACAAATTCGCAAAAGAATGAATACGAATTGGATTGTAAACTTGAACCCGAAAGCAAAAATGAAAAGCATGACACGGATGATGATTGTAACGTCCCGGAAGCCGAGGACGTGAGTTTTGGTGAAAGGGACCAGTCAGATGTGAAAGTAGTTGATAAATATGAGTGTACTGAGTGTGGTAGGTCCTTTCGCTTGGCCAGTAGTCTCAGGACGCATTTGATAAAACATGGGAAGAAAATTCGGTGTGAGGTTTGTGGAAAAGAATTTAATCTTGTCAAACACTTAAATTCTCATTTAAAAGTGCACGCAGATTACAGACCACACTTTTGCAAGATTTGCAACAAGTCATTCAATACGACCGGAAGTCTGACAAAGCACATGAGGATTCACGGAGGAGAAAAGAAACACCTGTGCATGCAGTGTGGCAAACGGTTTTATGAGCCAGGTCATTTAGTTGTGCACATGCGGACACACACAGGTGAAAAGCCTATAATTTGCAGCATTTGTGGAAAAGGTTTCGCCGATCCACACGGTTTGGTTGCCCACAATAAAATTCATTCTGGCGAAAGAAATTACGAATGCAATACCTGTGGCAAACGATTTGCACATTCGTTTGTTTTAACGGCTCACAAGAGGACCCACACGGGAGAAAAGCCGTACGTTTGTACGATTTGTGGTGCCGCGTTTGCAACATCCTCGTACTTAACCATACACACCAGAACACATACGCAAGAGCGGCCATATAAATGTGATACCTGTCCAAAAgCTTTCGTAAGCAAATGTGCGCTCGTTGCCCACAATATGATCCATACGGGAGAAAAGAAATTCCAATGCTTCGTGTGTGGGAAACGAACAGGACGCGCAGCTGACTTAACGATACACATGCGTTCTCATACAGGTGAGAAGCCGTACAGTTGCGATCAGTGTCCGAAAAAATATCACACGTCCAGTAATCTCTCAGCACACAGACGAACTCATCTTGGCATTCGCGATCACGTTTGTTCCATCTGCGGTAAAGCTTTCGGTGATTCTAGAACGCTGAAGTGTCATACCAGAAcacacacgggcgagaagccgtaCGTATGTCACATATGCGGAAGCAGGTACACGCAGTCAGGTCAATTGGCCGCACATCGAAAAACTCATCATCCCCAGAACCAACAAATGCAAGTCGAATCTGTCGCGTAA
Protein Sequence: MEEFNITVITNINRLCRTCLSERNEQDLRLIFEAAIDTMLKGLADISASKDDGLPSYMCRDCVLQLGLAFTFKEQCQKSDAQLRELLLPPPQTHLQPKSLVINFNVEEQCSSTESDHKTIQLDPVKIQQINTNSQKNEYELDCKLEPESKNEKHDTDDDCNVPEAEDVSFGERDQSDVKVVDKYECTECGRSFRLASSLRTHLIKHGKKIRCEVCGKEFNLVKHLNSHLKVHADYRPHFCKICNKSFNTTGSLTKHMRIHGGEKKHLCMQCGKRFYEPGHLVVHMRTHTGEKPIICSICGKGFADPHGLVAHNKIHSGERNYECNTCGKRFAHSFVLTAHKRTHTGEKPYVCTICGAAFATSSYLTIHTRTHTQERPYKCDTCPKAFVSKCALVAHNMIHTGEKKFQCFVCGKRTGRAADLTIHMRSHTGEKPYSCDQCPKKYHTSSNLSAHRRTHLGIRDHVCSICGKAFGDSRTLKCHTRTHTGEKPYVCHICGSRYTQSGQLAAHRKTHHPQNQQMQVESVA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258320;
90% Identity: iTF_01258320;
80% Identity: -