Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284475.1:2461628-2464552[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 0.00098 0.09 14.7 3.5 1 23 54 76 54 76 0.98

2 25 0.19 18 7.5 2.1 1 23 82 105 82 105 0.97

3 25 0.069 6.4 8.9 2.4 2 23 112 133 111 133 0.97

4 25 0.00013 0.012 17.5 2.1 1 23 139 161 139 161 0.99

5 25 0.017 1.6 10.8 2.2 1 22 167 188 167 190 0.87

6 25 0.00077 0.071 15.0 0.5 2 23 217 239 216 239 0.95

7 25 0.0075 0.69 11.9 0.5 2 23 310 332 310 332 0.93

8 25 0.83 77 5.5 0.3 1 19 337 355 337 359 0.93

9 25 0.0035 0.32 12.9 1.0 1 23 365 387 365 387 0.98

10 25 0.00082 0.076 14.9 0.1 1 23 393 416 393 416 0.91

11 25 0.00057 0.053 15.4 2.0 1 23 421 443 421 443 0.98

12 25 0.081 7.5 8.6 5.8 1 23 452 474 452 474 0.97

13 25 2.2e-05 0.002 19.9 0.4 1 23 479 501 479 501 0.98

14 25 1.2e-05 0.0011 20.7 1.7 3 23 509 529 507 529 0.98

15 25 1.6e-06 0.00015 23.4 1.4 1 23 535 558 535 558 0.97

16 25 0.00085 0.078 14.9 0.3 2 23 605 627 605 627 0.95

17 25 1.2 1.1e+02 5.0 2.4 1 23 632 654 632 654 0.94

18 25 0.00022 0.02 16.7 3.7 1 23 660 682 660 682 0.98

19 25 0.00012 0.011 17.6 0.1 1 23 688 711 688 711 0.93

20 25 1.5e-05 0.0014 20.4 2.8 1 23 716 738 716 738 0.98

21 25 5e-05 0.0046 18.8 1.7 1 23 747 769 747 769 0.99

22 25 6.8e-06 0.00063 21.5 0.9 1 23 774 796 774 796 0.98

23 25 2.7e-06 0.00025 22.7 2.2 1 23 802 824 802 824 0.98

24 25 1.4e-05 0.0013 20.5 0.2 3 23 832 853 830 853 0.97

25 25 6.4e-05 0.0059 18.4 3.1 1 23 859 881 859 881 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	0.00098	0.09	14.7	3.5	1	23	54	76	54	76	0.98
2	25	0.19	18	7.5	2.1	1	23	82	105	82	105	0.97
3	25	0.069	6.4	8.9	2.4	2	23	112	133	111	133	0.97
4	25	0.00013	0.012	17.5	2.1	1	23	139	161	139	161	0.99
5	25	0.017	1.6	10.8	2.2	1	22	167	188	167	190	0.87
6	25	0.00077	0.071	15.0	0.5	2	23	217	239	216	239	0.95
7	25	0.0075	0.69	11.9	0.5	2	23	310	332	310	332	0.93
8	25	0.83	77	5.5	0.3	1	19	337	355	337	359	0.93
9	25	0.0035	0.32	12.9	1.0	1	23	365	387	365	387	0.98
10	25	0.00082	0.076	14.9	0.1	1	23	393	416	393	416	0.91
11	25	0.00057	0.053	15.4	2.0	1	23	421	443	421	443	0.98
12	25	0.081	7.5	8.6	5.8	1	23	452	474	452	474	0.97
13	25	2.2e-05	0.002	19.9	0.4	1	23	479	501	479	501	0.98
14	25	1.2e-05	0.0011	20.7	1.7	3	23	509	529	507	529	0.98
15	25	1.6e-06	0.00015	23.4	1.4	1	23	535	558	535	558	0.97
16	25	0.00085	0.078	14.9	0.3	2	23	605	627	605	627	0.95
17	25	1.2	1.1e+02	5.0	2.4	1	23	632	654	632	654	0.94
18	25	0.00022	0.02	16.7	3.7	1	23	660	682	660	682	0.98
19	25	0.00012	0.011	17.6	0.1	1	23	688	711	688	711	0.93
20	25	1.5e-05	0.0014	20.4	2.8	1	23	716	738	716	738	0.98
21	25	5e-05	0.0046	18.8	1.7	1	23	747	769	747	769	0.99
22	25	6.8e-06	0.00063	21.5	0.9	1	23	774	796	774	796	0.98
23	25	2.7e-06	0.00025	22.7	2.2	1	23	802	824	802	824	0.98
24	25	1.4e-05	0.0013	20.5	0.2	3	23	832	853	830	853	0.97
25	25	6.4e-05	0.0059	18.4	3.1	1	23	859	881	859	881	0.98

Sequence Information

Coding Sequence: atggtttatactagcaGAACAGAGAAGACTAGTGGCACAAGCGATCCACTACAAAAAAGCAGCCTAAGTGAAAATGATCCTATGCACGTGTTATCACACAGCGGTAAGCGTAACAGTACCAAGGTCACCTCGAAGAACCATCACACAAGCAAAAGGAAGTACACGTGCACCCTGTGCGAGTACACCTGCGTCCTTAAGAGGAACTTAAAAAATCACATGCTCTCTCACACCGAGAAGAAGCCCTTCAAATGCACTTTTTGCGATTACCAATGCGGCGAAGCCACGGTTTTAAACAGGCACATATCATCgaggcacaccggcgagaaactaATTAAATGTAACCAGTGCAGTTACAAATGTAATTACGTAGGAAGCTTGAAGGGGCACATGTTGAAGCACATCGGCGAGAAACCGTACAAGTGCGATTACTGCGAGTACAGGAGCGTCTACAAGAGCAACTTGACGACGCACTTGCTgaggcacaccggcgagaagccctTCAAGTGCGATTTCTGCGGCCATAGTTACACGCGACCTGGTTACTTGAGGTTTCACGTTGTGTCGAGGCACCCCGGCGAGGTTCTGTTGGAATCCGCTACAACTTCGGCCAGTCCAAAGCGTGAGGGTCTTGAAACCGAAGAGCCATTGAAGTGTTACGATTGCGGATACCAGTTTAAGGCGGTGCGAAATTTGATGAGGCACATCGAGAAGAGTCACGCAAGCCAGgttcttttatatttttttgtaagcgTGAAAGCTTTGAGCGAAACCTCGGTGTACCTCCGTGAAGCtaattttttctctctctttgtTTCTAGATACCCGTTGGTTCCGAACCCCGCAGCGTCAGTCCGCAGCCTTCAAGATTATTTAGTGCTCGTCAAACTGGAACCACCCACCACCTTGGTAACTCACGACCCCCCCGCCCAATGCAACCTCTGCGGGGAATTTTTTCCCAACAAACGGAAGCTGTATTACCACAAGGACGTCGCTCATAAACCGAAGATATTTCAGTGCGATTCATGTCCGGTGGCGTTTCAGACTATCCATAGATTGAGGGCGCATGCCCCACGACACGAACTTCTTAGGAAATACACCTGCGATCTGTGTTTGGCGACTTTCAAGCGAAAGGCATCGCTTGATCTTCACAAGCAAAGGCACGAAGGCAACTATCAGTACGTGTGTGAGACGTGCGGAAAAGGGTTCGTGCTTTTGGCCGATTTGAGGCGTCACAACGACATCTTTCACCTTAACGTGAAGCACAAGTGTGAGATTTGCGAGAAGGAGTTTCAATCTATTTTCTACCTGAAGGCGCACGTGAAAACGCACGATCCCACCCAGGCCCGAAAAACACACCGCTGCACCATATGCGGCCAGGAATACGCGAACCACTCGGGTCTTAGGTGCCACATGTACAAACACACCGGGAAAGTGTTCGTGTGCGATTCGTGCGGAAAGCAGTTGTCCACCCCGGACAAACTCAAGTATCACATGAGgatacataccggcgagaaaccgtacGGTTGCCACACGTGCGGCAAGACCTTCACGAAGAAAAACATGTTGGTCGAGCACATACGGGTCCACACGAAGGAGAAACCGTACCCGTGCAAGATCTGCGGAAAGTGCTTCACGCAGAGGTCGTCCGTTTCGATTCACATTAAATCCGTGCACTTGGATGAGAAGCCTTTCGCCTGTTGCATCTGCGACAAGAAGTCTGCTGCAACGGCGACATCTCTGATTGGCAGTGCTGAAGTGTATTACGTTAAAGTAGGGCCCTTCGGAGGTCTAAAACTGCACGGGTTGCCCAACGAATGCGGCGTCTGTAGCAAGACGTTCGGCAATCGAAGGCAACTCAACTCTCACGTGGAAATGATCCACAAGCCGAAGATATACAAGTGCGATTCGTGTCCCGTGGCTTTTTCCACCGTGTACAGATTAAACTGCCACAAGTTGCGCCATGAGACGGAGAAAAAACACCGCTGCGATCTTTGCACGGCGACCTTCAAGCGCAAGTTCTCCCTTGAGCTCCACATGCAGAGACACCTCGGCATCTACCAGTACGTGTGCGATATTTGTGGGCAGGGCTTCGTGGTGCAGGCCGAACTGAAACGCCATACTGACCTTTACCACCTCAACGTGACGCACAAGTGCGAGCTTTGCGAGAAAGAGTTCCGAACCCTTTCCTACCTCAAAGCTCACCTCAAGTCCCACGACCCGAAGGCGATGCGTCGCGTGTACCGCTGCGAAATCTGCGGGCAAGAGTACGCCAACCACACGGGCCTTAGGCGTCACCGCAACAGGCACGCGGGCAAGGAGTTCATGTGCGACCTATGCGGAAAACAGTTTACTTCCTTGGAGAAACTCAAGTACCACATACGCATCCACACGGGCGAGAAACCGTACGCTTGTCACGTGTGCGACAAGAGGTTCAGCAAGAAGTCCTTCCTGATAATGCACATCAGGGTTCACACGAAAGAACGGCCTTACGGATGTAACGTCTGCGGAAAATTCTTCACGCAGCCGTCGTCCGTCCGCATACACATTAAGTCGGTGCACACCAACGAGAAACCTTTTACCTGTTGCGTCTGCGACAAAAAGTTTGCCACACAGAGCCTCCTTAATATTCACTCGAAATCACATGGTGCTATATTATCTCGCGATTAG
Protein Sequence: MVYTSRTEKTSGTSDPLQKSSLSENDPMHVLSHSGKRNSTKVTSKNHHTSKRKYTCTLCEYTCVLKRNLKNHMLSHTEKKPFKCTFCDYQCGEATVLNRHISSRHTGEKLIKCNQCSYKCNYVGSLKGHMLKHIGEKPYKCDYCEYRSVYKSNLTTHLLRHTGEKPFKCDFCGHSYTRPGYLRFHVVSRHPGEVLLESATTSASPKREGLETEEPLKCYDCGYQFKAVRNLMRHIEKSHASQVLLYFFVSVKALSETSVYLREANFFSLFVSRYPLVPNPAASVRSLQDYLVLVKLEPPTTLVTHDPPAQCNLCGEFFPNKRKLYYHKDVAHKPKIFQCDSCPVAFQTIHRLRAHAPRHELLRKYTCDLCLATFKRKASLDLHKQRHEGNYQYVCETCGKGFVLLADLRRHNDIFHLNVKHKCEICEKEFQSIFYLKAHVKTHDPTQARKTHRCTICGQEYANHSGLRCHMYKHTGKVFVCDSCGKQLSTPDKLKYHMRIHTGEKPYGCHTCGKTFTKKNMLVEHIRVHTKEKPYPCKICGKCFTQRSSVSIHIKSVHLDEKPFACCICDKKSAATATSLIGSAEVYYVKVGPFGGLKLHGLPNECGVCSKTFGNRRQLNSHVEMIHKPKIYKCDSCPVAFSTVYRLNCHKLRHETEKKHRCDLCTATFKRKFSLELHMQRHLGIYQYVCDICGQGFVVQAELKRHTDLYHLNVTHKCELCEKEFRTLSYLKAHLKSHDPKAMRRVYRCEICGQEYANHTGLRRHRNRHAGKEFMCDLCGKQFTSLEKLKYHIRIHTGEKPYACHVCDKRFSKKSFLIMHIRVHTKERPYGCNVCGKFFTQPSSVRIHIKSVHTNEKPFTCCVCDKKFATQSLLNIHSKSHGAILSRD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00465175;
90% Identity: -
80% Identity: -