Basic Information

Insect: Dorcus hopei
Gene Symbol: -
Assembly: GCA_033060865.1
Location: CM065425.1:76684846-76688371[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 25 2.3 2.6e+02 3.9 1.1 7 23 8 25 4 25 0.94

2 25 1.5e-05 0.0017 20.2 0.5 1 23 58 80 58 80 0.97

3 25 0.0072 0.8 11.8 5.3 1 23 142 164 142 164 0.98

4 25 0.17 19 7.4 2.1 1 23 170 193 170 193 0.97

5 25 0.062 6.8 8.8 2.4 2 23 200 221 199 221 0.97

6 25 0.024 2.7 10.1 2.2 1 22 235 256 235 258 0.86

7 25 0.0067 0.74 11.9 0.5 2 23 328 350 328 350 0.93

8 25 0.74 82 5.4 0.3 1 19 355 373 355 377 0.93

9 25 0.0032 0.35 12.9 1.0 1 23 383 405 383 405 0.98

10 25 0.00073 0.081 14.9 0.1 1 23 411 434 411 434 0.91

11 25 0.00051 0.057 15.4 2.0 1 23 439 461 439 461 0.98

12 25 0.073 8.1 8.6 5.8 1 23 470 492 470 492 0.97

13 25 2e-05 0.0022 19.8 0.4 1 23 497 519 497 519 0.98

14 25 1.1e-05 0.0012 20.7 1.7 3 23 527 547 525 547 0.98

15 25 1.4e-06 0.00016 23.4 1.4 1 23 553 576 553 576 0.97

16 25 0.00076 0.084 14.9 0.3 2 23 623 645 623 645 0.95

17 25 0.9 1e+02 5.2 2.7 1 23 650 672 650 672 0.94

18 25 0.00099 0.11 14.5 4.6 1 23 678 700 678 700 0.98

19 25 0.0001 0.011 17.6 0.1 1 23 706 729 706 729 0.93

20 25 1.3e-05 0.0015 20.4 2.8 1 23 734 756 734 756 0.98

21 25 4.4e-05 0.0049 18.7 1.7 1 23 765 787 765 787 0.99

22 25 6.1e-06 0.00068 21.4 0.9 1 23 792 814 792 814 0.98

23 25 2.4e-06 0.00027 22.7 2.2 1 23 820 842 820 842 0.98

24 25 7e-06 0.00077 21.3 0.2 3 23 850 871 848 871 0.97

25 25 5.7e-05 0.0063 18.4 3.1 1 23 877 899 877 899 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	25	2.3	2.6e+02	3.9	1.1	7	23	8	25	4	25	0.94
2	25	1.5e-05	0.0017	20.2	0.5	1	23	58	80	58	80	0.97
3	25	0.0072	0.8	11.8	5.3	1	23	142	164	142	164	0.98
4	25	0.17	19	7.4	2.1	1	23	170	193	170	193	0.97
5	25	0.062	6.8	8.8	2.4	2	23	200	221	199	221	0.97
6	25	0.024	2.7	10.1	2.2	1	22	235	256	235	258	0.86
7	25	0.0067	0.74	11.9	0.5	2	23	328	350	328	350	0.93
8	25	0.74	82	5.4	0.3	1	19	355	373	355	377	0.93
9	25	0.0032	0.35	12.9	1.0	1	23	383	405	383	405	0.98
10	25	0.00073	0.081	14.9	0.1	1	23	411	434	411	434	0.91
11	25	0.00051	0.057	15.4	2.0	1	23	439	461	439	461	0.98
12	25	0.073	8.1	8.6	5.8	1	23	470	492	470	492	0.97
13	25	2e-05	0.0022	19.8	0.4	1	23	497	519	497	519	0.98
14	25	1.1e-05	0.0012	20.7	1.7	3	23	527	547	525	547	0.98
15	25	1.4e-06	0.00016	23.4	1.4	1	23	553	576	553	576	0.97
16	25	0.00076	0.084	14.9	0.3	2	23	623	645	623	645	0.95
17	25	0.9	1e+02	5.2	2.7	1	23	650	672	650	672	0.94
18	25	0.00099	0.11	14.5	4.6	1	23	678	700	678	700	0.98
19	25	0.0001	0.011	17.6	0.1	1	23	706	729	706	729	0.93
20	25	1.3e-05	0.0015	20.4	2.8	1	23	734	756	734	756	0.98
21	25	4.4e-05	0.0049	18.7	1.7	1	23	765	787	765	787	0.99
22	25	6.1e-06	0.00068	21.4	0.9	1	23	792	814	792	814	0.98
23	25	2.4e-06	0.00027	22.7	2.2	1	23	820	842	820	842	0.98
24	25	7e-06	0.00077	21.3	0.2	3	23	850	871	848	871	0.97
25	25	5.7e-05	0.0063	18.4	3.1	1	23	877	899	877	899	0.98

Sequence Information

Coding Sequence: ATGAAGAGGTGTACAACCTCTAACAAAAGTTTCGATACGTTCAATCAGTTGAGTAGGCACAGAAGTAGGACGCACGGAATGAAACTACACGAGTGCGACGTCCGCAAGAAAACTTTCCGTTTCCTGTTTCAAGTGAACGGCCACGAATTCATTCACAAGAGAGACAAGGAGTACCCTTGCGACTCATGTGGGAAGACGTTCGAAAGCCCGAAAACATTGAAAACCCATACAAATTGGCACACCGGAACCGAACGAAAGTTAGACATGGTTTATACTAGTAGAACAGAGAAGACTAGTGGCACAAGCGATCCACTACAAAAAAGCAGCCTAAGTGAAAATAATCCTATGCACATGTTATCACACAGCGGCAAGCGTAACAGTACCAAGGTCACCTTGAATAACCATCAAACAAGCAAAAGGAAGCACACGTGCACCCTGTGCGAGTACACCTGCGTCCTTAAGAGGAACTTAAAAAATCACATGCTCTCTCACACCGAGAAGAAGCCCTTCAAATGCACCTTCTGCGATTACCAATGTGGCGAAGCCACGGTTTTAAACAGGCACATATCATCgaggcacaccggcgagaaactaATTAAATGTAACCAGTGCAGTTACAAATGTAATTACGTAGGAAGCTTGAAGGGGCACATGTTGAAACACAACGGCGAGAAACCGTACAAgcacaccggcgagaagccctTCAAGTGCGATTTCTGCGGCCATAGTTACACGCGGGCTGGTTACTTGAGGTTTCACGTTGTGTCGAGGCACCCCGGCGAGGTTCTGTTGGAATCCGATTTGGCTCCGAAGCGTGAGGCCCTTAAAACCGACGAAGAAGAGCTGCTGAAGTGTTACGATTGCGGTTATCAGTACCCGTTAGTTCCGAACCCCGCAGCGTCAGTCCGCAGCCTTCAAGATTATTTAGTGCTCGTCAAACTGGAACCACCTACCACCTTGGTAACTCACGAACCCCCCGCCCAGTGCAACCTCTGCGGAGAATTTTTTCCCAACAAACGGAAGCTGTATTACCACAAAGATGTCGCTCATAAACCGAAGATATTTCAGTGCGATTCATGTCCGGTGGCATTTCAGACTATTCACAGATTGAGGGCGCATGCCCCACGACATGAACTCCTTAGGAAATACACCTGCGATCTGTGTTTGGCGACTTTTAAGCGAAAGGCATCGCTCGATCTTCACAAGCAAAGGCACGAAGGCAACTATCAGTATGTATGCGAGACGTGCGGCAAAGGGTTCGTGCTCTTGGCCGATTTGAGACGTCACAACGACATCTTTCACCTTAACGTGAAGCACAAGTGTGAGATTTGCGAGAAGGAGTTTCAATCTATCTTTTACCTGAAGGCGCACGTGAAAACGCACGATCCCACCCAGGCCCGGAAAATACACCGCTGCACTATCTGTGGCCAGGAATACGCGAACCACTCGGGTCTTAGGTGCCACATGTATAAACACACCGGGAAAGTGTTCGTGTGCGATTCGTGCGGAAAGCAGTTGTCCACCCCGGATAAACTCAAGTATCACATGAGgatacataccggcgagaaaccgtacGGTTGCCACACGTGCGGCAAAACCTTCACGAAGAAAAACATGTTGGTCGAGCACATACGGGTCCACACGAAGGAGAAACCTTATCCGTGCAAGATCTGCGGAAAGTGCTTCACGCAGAGGTCGTCCGTTTCGATTCACATTAAATCCGTGCACTTGGATGAGAAGCCTTTCGCCTGTTGCATCTGCGATAAAAAgTCTGCTGCAACGGCGACGTCTTTGATTGGCAGAACTGAAGTGTATTACGTTAAAGTGGGGCCCTTCGGCGGTCTAAAACTGCACGGCTTACCCAATGAATGCGGCGTCTGTAGCAAGACGTTCGGCAATAGAAGGCAACTTAACTCTCACGTGGAAATGATCCACAAGCCGAAAATATATAAGTGCGATTCGTGCCCCTTGGCATTTTCCACCGTGTACAGATTAAACTGCCACAAGTTGCGCCATGAGACGGAGAAAAAACACCGCTGCGATCTTTGCACGTCGACCTTCAAGCGCAAGTTCTCCCTGGAGCTCCACATGCAGAGACACCTTGGCATCTACCAGTACGTGTGCGATATTTGTGGACAGGGCTTCGTGGTACAGGCCGAATTGAAACGCCATACTGACCTTTACCACCTCAACGTGACGCACAAGTGCGAGCTTTGCGAGAAAGAGTTCCGAACCCTGTCCTACCTCAAAGCTCACCTCAAGTCCCACGACCCCAAGGCGATGCGTCGTGTGTACCGCTGCGAAATCTGCGGGCAAGAGTACGCCAACCACACGGGTCTTAGGCGTCACCGCAACAGGCACGCGGGCAAGGAGTTCATGTGCGACCTATGCGGAAAACAGTTTACTTCCTTGGAGAAACTCAAGTACCACATACGCATCCACACGGGCGAGAAACCGTACGCCTGTCACGTGTGCGACAAGAGGTTCAGCAAGAAGTCCTTCCTGATAATGCACATCAGGGTCCACACGAAAGAACGGCCGTACGGGTGTAACATCTGCGGAAAATTCTTCACGCAGCCGTCGTCCGTCCGCATACACATCAAATCGGTGCACACCAACGAGAAACCTTTCACCTGTTGCGTCTGCGACAAAAAGTTCGCCACACAGAGTCTCCTTAATATTCACTCGAAATCACATGGTGCTATATCATCTCACGATTAG
Protein Sequence: MKRCTTSNKSFDTFNQLSRHRSRTHGMKLHECDVRKKTFRFLFQVNGHEFIHKRDKEYPCDSCGKTFESPKTLKTHTNWHTGTERKLDMVYTSRTEKTSGTSDPLQKSSLSENNPMHMLSHSGKRNSTKVTLNNHQTSKRKHTCTLCEYTCVLKRNLKNHMLSHTEKKPFKCTFCDYQCGEATVLNRHISSRHTGEKLIKCNQCSYKCNYVGSLKGHMLKHNGEKPYKHTGEKPFKCDFCGHSYTRAGYLRFHVVSRHPGEVLLESDLAPKREALKTDEEELLKCYDCGYQYPLVPNPAASVRSLQDYLVLVKLEPPTTLVTHEPPAQCNLCGEFFPNKRKLYYHKDVAHKPKIFQCDSCPVAFQTIHRLRAHAPRHELLRKYTCDLCLATFKRKASLDLHKQRHEGNYQYVCETCGKGFVLLADLRRHNDIFHLNVKHKCEICEKEFQSIFYLKAHVKTHDPTQARKIHRCTICGQEYANHSGLRCHMYKHTGKVFVCDSCGKQLSTPDKLKYHMRIHTGEKPYGCHTCGKTFTKKNMLVEHIRVHTKEKPYPCKICGKCFTQRSSVSIHIKSVHLDEKPFACCICDKKSAATATSLIGRTEVYYVKVGPFGGLKLHGLPNECGVCSKTFGNRRQLNSHVEMIHKPKIYKCDSCPLAFSTVYRLNCHKLRHETEKKHRCDLCTSTFKRKFSLELHMQRHLGIYQYVCDICGQGFVVQAELKRHTDLYHLNVTHKCELCEKEFRTLSYLKAHLKSHDPKAMRRVYRCEICGQEYANHTGLRRHRNRHAGKEFMCDLCGKQFTSLEKLKYHIRIHTGEKPYACHVCDKRFSKKSFLIMHIRVHTKERPYGCNICGKFFTQPSSVRIHIKSVHTNEKPFTCCVCDKKFATQSLLNIHSKSHGAISSHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00466590;
90% Identity: -
80% Identity: -