Basic Information

Insect: Dorcus parallelipipedus
Gene Symbol: -
Assembly: GCA_958336345.1
Location: OY284483.1:34649493-34652064[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 4.4e-06 0.0004 22.1 0.4 1 23 115 137 115 137 0.99

2 15 0.00013 0.012 17.5 3.4 1 23 143 165 143 165 0.93

3 15 7.5e-05 0.0069 18.2 4.9 1 23 171 193 171 193 0.99

4 15 2.3e-07 2.1e-05 26.1 1.2 2 23 200 221 199 221 0.97

5 15 9.2e-06 0.00085 21.1 0.3 1 23 227 249 227 249 0.98

6 15 3.9e-06 0.00036 22.2 1.2 1 23 255 277 255 277 0.98

7 15 4e-06 0.00037 22.2 0.9 1 23 283 305 283 305 0.98

8 15 1.5e-06 0.00014 23.5 2.1 1 23 311 333 311 333 0.95

9 15 5.2e-06 0.00048 21.8 3.1 1 23 339 361 339 361 0.99

10 15 6.2e-08 5.7e-06 27.9 2.2 1 23 367 389 367 389 0.98

11 15 5.5e-06 0.00051 21.8 0.6 1 23 398 420 398 420 0.97

12 15 1.5e-06 0.00013 23.6 2.2 1 23 426 448 426 448 0.98

13 15 7.9e-06 0.00073 21.3 0.1 1 23 454 476 454 476 0.98

14 15 3.4e-06 0.00031 22.4 1.3 1 23 482 504 482 504 0.99

15 15 7.5e-06 0.0007 21.3 0.2 1 23 510 534 510 534 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	4.4e-06	0.0004	22.1	0.4	1	23	115	137	115	137	0.99
2	15	0.00013	0.012	17.5	3.4	1	23	143	165	143	165	0.93
3	15	7.5e-05	0.0069	18.2	4.9	1	23	171	193	171	193	0.99
4	15	2.3e-07	2.1e-05	26.1	1.2	2	23	200	221	199	221	0.97
5	15	9.2e-06	0.00085	21.1	0.3	1	23	227	249	227	249	0.98
6	15	3.9e-06	0.00036	22.2	1.2	1	23	255	277	255	277	0.98
7	15	4e-06	0.00037	22.2	0.9	1	23	283	305	283	305	0.98
8	15	1.5e-06	0.00014	23.5	2.1	1	23	311	333	311	333	0.95
9	15	5.2e-06	0.00048	21.8	3.1	1	23	339	361	339	361	0.99
10	15	6.2e-08	5.7e-06	27.9	2.2	1	23	367	389	367	389	0.98
11	15	5.5e-06	0.00051	21.8	0.6	1	23	398	420	398	420	0.97
12	15	1.5e-06	0.00013	23.6	2.2	1	23	426	448	426	448	0.98
13	15	7.9e-06	0.00073	21.3	0.1	1	23	454	476	454	476	0.98
14	15	3.4e-06	0.00031	22.4	1.3	1	23	482	504	482	504	0.99
15	15	7.5e-06	0.0007	21.3	0.2	1	23	510	534	510	534	0.94

Sequence Information

Coding Sequence: ATGTTGAAGAGCTGCACTTCTTTAACGTTTTTAGAGAACGACGGCCTGCCGTCGAGCCTATGCAAGGAGTGCCACGGCCAGTTATTAACCGCGTACGCTTTTAAGAGGAAGTGCGAGGAGGCCGATTGTACGTTACGCACTTGTCTCATCAACAAAGTCGAAGAGCCAAATAATTATCATTGTGGAGATGATGATAACGATGATGTGATTAATCAGAATGATGAGGGTATTTTTAATGTGGTTTGTGATGACGGTGTTTCCGCAGATTTGGATAGTGCAAGATGTGAAGGTGATACTACCGTTGTTGTTGATGACGGTAATGATTTGAAACAGAGAAAGTTGTATGAATGTCGAATTTGTAAAAAGAGTTATGTTCAACGAACGGGCCTCGTCTGGCATATGCGGGTACACACCGGTGAAAGACCCTTTCTGTGTAGTCATTGTGGTAAGGGATTTATCCGCAGTGATGATCTTCTGCGACACTGTCGAGTGCACACAGGTGAGAGGCCTTTTAAGTGCACCATTTGCAAAAGAGGTTTCAAGCAGAAGTTCCATTTATCAGAACACGAGCGTTCCCACAATGGCAAGAGAGAGTTGTCTTGCAAAGAATGTGGAAAGAGTTTTACGAGGTACGGTGTTTTACGCACGCACATGAGGACTCACACGGGATTAAAACCTTACACATGCCCCGTGTGTTCCAAAAGATTCGTCGGATCGGACACCCTTGCGAAACACTTGAAGCTACACACCGGCGAAAAACCACATTCGTGCAGCGAGTGTGGTCGAAACTTCGCGCAAGTCGATCAGCTTCAGGTGCATTACAggacgcacaccggcgagaaaccttTCGTCTGCTCGATTTGCTCGAAGGCCTTCACGCAACAGCACGGCCTCAACGTGCACCTACTGAGTCACACCGGCGAACGCCCCTTTTTGTGCGCGACTTGCGGAAAGTCGTTCATCAGATCGGACGACCTGAAGAAGCATCACCGCATACACAGCAAAGAACGGCCTTACACTTGCTCGTTTTGCCCGAAGGCCTTCACTCAGTCCTTCCATCTTTCGGAGCACGTCCGGACTCACACGAACGATAAAGTGTTCTCCTGCAGCATATGCAACAAGACCTTCACCAGGAACGGTTCGCTGCGTTCTCATTTGAGGACGCACACGAAGAGTTACGCGGAAAAACAGTTCGCCTGCAGCATATGCGAAAAGCGCTTCAGCATAAGCTACTCATTGAATAAGCACATGTTGATACACACCGGGGAGAGGCCGTATTCCTGCGATTTATGCACAAAATCGTTCACCCAATCAGGACATCTAGAAACGCACCTCAAAgtgcacaccggcgagaagccctACATTTGCCAGGTGTGTGGCAAGGGATTCGCCGTTAGTTCTCGTTTGACCGTGCACGTGAGGACGCATACGGGCGAGAAGCCGTACGTCTGTTCAGTTTGCGGGAAGGGTTGCACCACTTCTACCATGCTCAAGATACATGTCAGGACGCACACCGGTGAGACTCCGTACCCGTGCCCCTCCTGCCCTAAGGCCTTTTCAAGGTCGGATTTGTTGAGTTTACATCGGCGAACGAACGGGCATTAA
Protein Sequence: MLKSCTSLTFLENDGLPSSLCKECHGQLLTAYAFKRKCEEADCTLRTCLINKVEEPNNYHCGDDDNDDVINQNDEGIFNVVCDDGVSADLDSARCEGDTTVVVDDGNDLKQRKLYECRICKKSYVQRTGLVWHMRVHTGERPFLCSHCGKGFIRSDDLLRHCRVHTGERPFKCTICKRGFKQKFHLSEHERSHNGKRELSCKECGKSFTRYGVLRTHMRTHTGLKPYTCPVCSKRFVGSDTLAKHLKLHTGEKPHSCSECGRNFAQVDQLQVHYRTHTGEKPFVCSICSKAFTQQHGLNVHLLSHTGERPFLCATCGKSFIRSDDLKKHHRIHSKERPYTCSFCPKAFTQSFHLSEHVRTHTNDKVFSCSICNKTFTRNGSLRSHLRTHTKSYAEKQFACSICEKRFSISYSLNKHMLIHTGERPYSCDLCTKSFTQSGHLETHLKVHTGEKPYICQVCGKGFAVSSRLTVHVRTHTGEKPYVCSVCGKGCTTSTMLKIHVRTHTGETPYPCPSCPKAFSRSDLLSLHRRTNGH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01258280;
90% Identity: iTF_01258280;
80% Identity: -