Dpar003157.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- -
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:33256343-33269758[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.00012 0.025 15.7 0.0 3 38 47 81 45 83 0.95 2 2 5e-10 1e-07 33.0 0.0 3 35 119 152 117 159 0.91
Sequence Information
- Coding Sequence
- ATGCGTGATCATCCCAATTTTGGCGCAAATTTCGCATGTGTCGAGAAATCAACAAATCAAGCTAAACAGagtattgttaaaaataattcaattagaaTCCGCGATTTCTTTACCCCTCGAAAATCCAAGTGGACTTGTGAAGAACTGCACCGTGCCATAGAATTCGTGCGGTCGGGGGTGCCGATAAAACCGGCTGCTGAGCAATGCAACATCCCCGTCATGACACTGTGGCGTCGTACCCGCGCCTTGGGGTTAGTTAGCAGCAGGGCAATGACGCGTTTTATTAAATCACCGAAACAGTGCAGCAAAAATTATCCGAACTTGCTAAAGCTTAAAACGCCGACGTGGACTCAAGCCCAGCTCAAGGAAGCCATCGAGGCAGTGGTCAAGCAAAAGATGCGTTTCACGCAAGCATCGTCACGCTATGGTATTCCCAAGGGAACTCTCTACGATAATATCTTAGGCAAATCTAGGCGCATGGCAGTATTAGAGGAGGCAGGTTTAACTCAGGAAGAAGAAGCAGCAGTGTTGGAATTTTGCTGTGATGTGTCTGTATCACCGTACAATAGACGGACAAAGAGATCGCTAAAATCAGTTTTAAATTACGTGGAAATGCTGAGGCGTGCGCGAGATCCGGAATTCATGTTCACCGGACTCTCCGGTTTCCGCTGGTGGTGGGCCTTCTGCAAGAAACACAGCATTGTTTCTCTGTACTACGAAAACAATGGTTCTTTGAACAACACACTATAA
- Protein Sequence
- MRDHPNFGANFACVEKSTNQAKQSIVKNNSIRIRDFFTPRKSKWTCEELHRAIEFVRSGVPIKPAAEQCNIPVMTLWRRTRALGLVSSRAMTRFIKSPKQCSKNYPNLLKLKTPTWTQAQLKEAIEAVVKQKMRFTQASSRYGIPKGTLYDNILGKSRRMAVLEEAGLTQEEEAAVLEFCCDVSVSPYNRRTKRSLKSVLNYVEMLRRARDPEFMFTGLSGFRWWWAFCKKHSIVSLYYENNGSLNNTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00950646;
- 90% Identity
- iTF_00464583;
- 80% Identity
- -