Dhop034217.1
Basic Information
- Insect
- Dorcus hopei
- Gene Symbol
- -
- Assembly
- GCA_033060865.1
- Location
- CM065425.1:43848502-43858826[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.1e-05 0.023 15.9 0.0 3 38 26 60 24 62 0.95 2 2 3.7e-10 9.5e-08 33.1 0.0 3 35 98 131 96 138 0.91
Sequence Information
- Coding Sequence
- ATGTTACTGACCGTATTATCATTTATATTAGAagTCCGCGATTTCTTTACCCCTCGAAAATCCAAGTGGACTTGTGAAGAACTGCACCGTGCCATAGAGTTCGTGCGGTCGGGGGTGCCGATAAAACCGGCTGCCGAGCAATGCAACATCCCCGTCATGACACTGTGGCGTCGTACCCGCGCCCTGGGGTTAGTTAGCAGCAGGGCAATGACGCGTTTTATTAAATCACCGAAACAGTGCAGCAAAAATTATCCGAACTTGCTAAAGCTTAAAACGCCGACGTGGACTCAAGCCCAGCTCAAGGAAGCCATCGAGGCAGTGGTCAAGCAAAAGATGCGTTTCACGCAAGCATCGTCACGCTACGGTATTCCCAAGGGAACTCTCTACGATAATATCTTAGGCAAATCTAGGCGCATGGCAGTATTAGAGGAGGCAGGTTTAACTCAGGAAGAAGAAGCAGCAGTGTTGGAATTTTGCTGTGATGTGTCTGTATCACCGTACAATAGACGGACAAAGAGATCGCTAAAATCAGTTTTAAATTACGTGGAAATGCTGAGGCGTGCGCGAGATCCGGAATTCATGTTCACCGGACTCTCCGGTTTCCGCTGGTGGTGGGCCTTCTGCAAGAAACACAGCATTGTTTCCCTGTACTATGAAAACAATGGTTCTTTGAACAACACACTATAA
- Protein Sequence
- MLLTVLSFILEVRDFFTPRKSKWTCEELHRAIEFVRSGVPIKPAAEQCNIPVMTLWRRTRALGLVSSRAMTRFIKSPKQCSKNYPNLLKLKTPTWTQAQLKEAIEAVVKQKMRFTQASSRYGIPKGTLYDNILGKSRRMAVLEEAGLTQEEEAAVLEFCCDVSVSPYNRRTKRSLKSVLNYVEMLRRARDPEFMFTGLSGFRWWWAFCKKHSIVSLYYENNGSLNNTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00950646;
- 90% Identity
- iTF_00465912;
- 80% Identity
- -