Dpar002072.1
Basic Information
- Insect
- Dorcus parallelipipedus
- Gene Symbol
- bab1
- Assembly
- GCA_958336345.1
- Location
- OY284475.1:18857009-18885394[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.9e-11 1.4e-08 35.7 0.0 1 39 513 552 513 556 0.90 2 4 6.5e-12 1.3e-09 39.0 0.1 1 39 567 605 567 608 0.95 3 4 1.7e-17 3.4e-15 56.9 0.0 1 45 622 667 622 667 0.98 4 4 2.2e-15 4.5e-13 50.1 0.1 1 40 674 714 674 718 0.93
Sequence Information
- Coding Sequence
- ATGTCTGGTCAACACTATTGCCTGCGCTGGAACAATTACCAAAGTAACATGACCACGGTATTTCATCAACTGTTACAGAATGAAGCCTTCGTGGACGTGACCCTAGCCTGCAACGATCTGTCGTTGAAAGCACACAAGGTAGTTCTGTCGGCGTGCTCCTCGTACTTTCAAAAACTCCTTCTAGAAAACCCCTGCAAACATCCCACGATCATAATGCCGCAAGACATCTGCTACGCCGATCTCAAATTCATCATCGAGTTCGTTTACAAAGGAGAAATCGACGTTTCCCAAGCGGAGTTGCAGAAGAAAAACCGACAGAGCCCTGCTACATATATCGCGCAAAAACCCCAATTAAACCGAAGTAGTAGTGCGTGCGCCGAGCATTTCTCGATCTATCGCGGTCGCAGCATCCCCGTAGTAGGCCTTCGCAAAGGGTCCAGTCTTAGTTCGCGCTCTTCGCAGAATTCAGTGCTGAAGGTCACCGAGGTCACACCACCGACTGACGAATTTCCTCCATTCCCTAAGATTCCTTTGGCTGAATTCCAATTTACATGTCTATCATTGCGTTGTTCTGCGATTTTCTTGGTCTTCCTCTTCTATTCATCATCTATCATTCTTACCAGGTGCTCAGATCACATCAGCTTCTTCTCTTTCATTATTCCTTCGTCAATCCAATTCTCCTCTATCCTAAATATTGAGTCCCTGTTGAAAACTGCCGATCAGCTCAAGATTAAAGGCCTGTGCGAGTCACccgaagaaaaagaaaactccGAGACCGCAGCCTTCCCCTTCATAACGAGAGGCTTCCCCAAACTGAGGAGGGTAGCATCTCCGAAACAGTTCAAGCCCTTGGATAACAACCGGAAATTAAAGTACAAGAAACCGGAGAGGAAACGCACTCCGGAAAACGAAGACAAAGATAATAAAGACAGCGTCATCGTCAGTAATTCGTCCGAGGACGAAAATGAAATGCCAATAGCCCTGGACGAGGAGAGCAGAAAGAGGAAATTAAGCGAATCCCAAAGTAAACCGCTGAATATGAGTAGTCATGCGGGTATTTTGACAGGACAGACTTTCTCCTTCTCCCAGTTCGGTGTGGACAATGAAGACTTTCCTCCAGAACCGCCGGCCCCAACGGCTATACCCGTCGGGAACGTAGACATGGAACACTCGCCGACGAGATCGCTCCTCACCAACTCGTCCATTCACAGAACCGACCTGTCAGATTCACACATAAAATACAGCGAAATTAAAAAGGAGCCGGACATTAAGTTCGAAACGTTGCGCTCTTACGACCAAGAATCCTTGTTGGACATGGAGGGCTCACACATGTCCGGTCCGGATCATTCGATGGACAGTCACGATGATCCGGAACACGGAATGCACACGATGATGATCACGCCGGAACTAATGGGTATGATGTCGACGATACCATCCAGATTAGATTCGAGTTGTAATGACATGTCCATGAAGAGTAACGGACATACGGACCAACACTCAACTGGAAGAGCACACGGCGGAGGACCAAAGACGTGGACGCAAGAAGACATGGAGTTGGCATTAGATGCCTTAAGAAATCATAATATGAGTCTGACAAAAGCGTCAGCGACATACGGAATTCCATCCACGACGCTCTGGCAGAGGGCGCACAGATTAGGCATAGACACACCAAAGAAGGAGGGCCCAACGAAATCGTGGACCGAAGAGAACCTCAACTCGGCACTCGAAGCCTTGAGGACGGGCACAATATCCGCAAACAAAGCCAGCAAGGCGTACGGCATACCAAGTAGCACACTGTATAAAATAGCCAGGCGGGAAGGCATAAGATTAGCGGCGCCTTTTAACGCAGCTCCGACGACGTGGACGCCGGAGGACTTAGAAAAGGCCTTGGAGTCGATTAGATCTGGTCAGACATCCGTGCAGAGGGCTTCCACGGAATTTGGAATACCGACGGGGACGTTATATGGGCGATGTAAGAGGGAAGGCATCGAGCTTTCGAGGTCGAATCCTACACCGTGGTCGGAAGATGCTATGGGCGAAGCGTTAGAGGCTGTTAGGTTAGGACACATGTCAATAAATCAGGCAGCAATACACTATAACCTGCCATATTCTTCTCTGTACGGAAGGTTCAAGCGAGGCATAAAATACGAAGCCGAAAACCTAGAATCCAACTCAGACAGCCAGTCGCACCTGGACGCGCAAGCCCACATGATGGACTACTCGAACTCCCATCAACAAATTCCGTATCAACAGCACCCGGCGAACAGCTGA
- Protein Sequence
- MSGQHYCLRWNNYQSNMTTVFHQLLQNEAFVDVTLACNDLSLKAHKVVLSACSSYFQKLLLENPCKHPTIIMPQDICYADLKFIIEFVYKGEIDVSQAELQKKNRQSPATYIAQKPQLNRSSSACAEHFSIYRGRSIPVVGLRKGSSLSSRSSQNSVLKVTEVTPPTDEFPPFPKIPLAEFQFTCLSLRCSAIFLVFLFYSSSIILTRCSDHISFFSFIIPSSIQFSSILNIESLLKTADQLKIKGLCESPEEKENSETAAFPFITRGFPKLRRVASPKQFKPLDNNRKLKYKKPERKRTPENEDKDNKDSVIVSNSSEDENEMPIALDEESRKRKLSESQSKPLNMSSHAGILTGQTFSFSQFGVDNEDFPPEPPAPTAIPVGNVDMEHSPTRSLLTNSSIHRTDLSDSHIKYSEIKKEPDIKFETLRSYDQESLLDMEGSHMSGPDHSMDSHDDPEHGMHTMMITPELMGMMSTIPSRLDSSCNDMSMKSNGHTDQHSTGRAHGGGPKTWTQEDMELALDALRNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPTKSWTEENLNSALEALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLEKALESIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGIKYEAENLESNSDSQSHLDAQAHMMDYSNSHQQIPYQQHPANS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00980857;
- 90% Identity
- iTF_00466523;
- 80% Identity
- iTF_00466523;